Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g08718 | ATGAATCGTAAGCCTCCTTTTAAGTTGTTACTACACTTTTATATCTTTCTGCTTCACCTTTACTGTTTCTGTTCTTATCCCACACCCATGAATTGCACCGACACAACCCGCGTTTGCACTTCCTTCATGGCCTTTAAGCCTCAGCCAAACCAGTCCTTGGCTGTGATACAGAGCATGTTTGATGTGTTGCCAAGTGACATTACTGTTGAAGGCAATGAATGGGGTTACATATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGGATGAAGAAGTATGTATCTAACACCACATTCACTGTGAAATCCAATGAAGGGTTTGTGTATGACATGGTGATGGATGCCTATGATGGACTTGCTTTCTTGCCCAACACCACCCGTTGGGCAAGACAAGGTGCTGTCATACCACTGAGCTTGTTTTGTAGCTGTTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCAGAGATGGGGATAGTATTGAATCATTGGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATCACCAATCCTGATAGTGCCATTGTTGGTTCTCTATATTATGTACCTCTGAATTCAGTTCCTGGTGATCCTTATCACCTGAAGAATGATACTCCTCCAGTTCCTGTCCCTTCTCCATCTGTTGATGATTTTTCAGATTATCAAATCAACAGTAAGGCTCATGTACCCTATGGATGGGTCATAGGAGGTCTAGGGGTTGGTCTTGCGCTAGTAATATTAAGCATGATTCTGTGTGTGTCCCTGAGATCTTCCAACTGTTTTGTTGAAGATAGAAATCATGCAAAAGATGCTGAGGGAAAGATCTCTCATAAGTTCCATATTTTTGGGAGTCCAAGTTTGTGTTGTGGTTCTGGAAGATACATATGTGGCAAAAGCAAACACGTAAACCAGAAGCAAACTGATGGTGAATCCAGCAGTGACCAAACTACTGTTCCCAAAACTTCAACTCTAAGACCTGAGGTTTTTGACTTGGATAAGCCAGTAGCTTTCACATATGAAGAGATTTTTTCATCAACTGATGGTTTCTCTGATTCAAATCTGCTTGGGCACAGAACATTTGGTTCTGTTTTCTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATAAAGGCTACTAAAACTAAAGAATTTATGTCAGAGATGAAAGTTCTGAACAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGTTATGCGGCTAGTCAAGATGAGCTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATCCATCACTTTCTTGGATCACAAGGGTCCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGCTATGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCTTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTTGGTAAAACAAATGAGGGAGAAACCACAACAACCAAAGTTGTTAGCACATATGGATACCTTGCTCCAGAATACTTGAGCAATCGCCTTGCAACGACTAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGAAGGCCATTATTGAAACACAAGGTCCTGAAAGACGATCACTGGCATCTATATTTGTCAAATTGCAGATGTTGGCAGTTCTTAGGAACGTACCAGATTCCTTGAGCATGTCAACCATGAGAGACCACATTGATCCTATTATGGTAGGTCTGTATCCCCATGATTGTGTATTCAAGATGGCCATGCTGGCAAAGCAATGTGTAGATGAGGATCCCATTTTACGTCCTGATATGAAGCAAGTTGTGCTTTCCCTCTCACAGATCCTCATGTCTTCTGTTGAGTGGGAAGCGACTCTGGCGGGGAACAGCCAGGTATTTAGTGGGCTTATTCAGGGAAGATAG | 1998 | 0.4159 | MNRKPPFKLLLHFYIFLLHLYCFCSYPTPMNCTDTTRVCTSFMAFKPQPNQSLAVIQSMFDVLPSDITVEGNEWGYIFIRKNCSCAAGMKKYVSNTTFTVKSNEGFVYDMVMDAYDGLAFLPNTTRWARQGAVIPLSLFCSCSSGLWNYLMSYVIRDGDSIESLASRFGVSMDSIETVNGITNPDSAIVGSLYYVPLNSVPGDPYHLKNDTPPVPVPSPSVDDFSDYQINSKAHVPYGWVIGGLGVGLALVILSMILCVSLRSSNCFVEDRNHAKDAEGKISHKFHIFGSPSLCCGSGRYICGKSKHVNQKQTDGESSSDQTTVPKTSTLRPEVFDLDKPVAFTYEEIFSSTDGFSDSNLLGHRTFGSVFYGLLRDQEVAIKRIKATKTKEFMSEMKVLNKVHHANLVELIGYAASQDELFLIYEYAQKGSLSSHLHDPQNKGHPSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTTTKVVSTYGYLAPEYLSNRLATTKSDVYAFGVVLFEIISGKKAIIETQGPERRSLASIFVKLQMLAVLRNVPDSLSMSTMRDHIDPIMVGLYPHDCVFKMAMLAKQCVDEDPILRPDMKQVVLSLSQILMSSVEWEATLAGNSQVFSGLIQGR. | 666 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g08718 | 665 | SUPERFAMILY | Protein kinase-like (PK-like) | 333 | 637 | IPR011009 | - | |
Seca4g08718 | 665 | ProSiteProfiles | LysM domain profile. | 151 | 195 | IPR018392 | - | |
Seca4g08718 | 665 | SMART | LysM_2 | 152 | 196 | IPR018392 | - | |
Seca4g08718 | 665 | FunFam | PTI1-like tyrosine-protein kinase 3 | 427 | 651 | - | - | |
Seca4g08718 | 665 | ProSiteProfiles | Protein kinase domain profile. | 355 | 641 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08718 | 665 | SMART | serkin_6 | 355 | 642 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g08718 | 665 | Gene3D | Phosphorylase Kinase; domain 1 | 327 | 426 | - | - | |
Seca4g08718 | 665 | SUPERFAMILY | LysM domain | 151 | 196 | IPR036779 | - | |
Seca4g08718 | 665 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 474 | 486 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g08718 | 665 | Gene3D | Transferase(Phosphotransferase) domain 1 | 428 | 654 | - | - | |
Seca4g08718 | 665 | Pfam | LysM domain | 153 | 189 | IPR018392 | - | |
Seca4g08718 | 665 | Pfam | Protein tyrosine and serine/threonine kinase | 359 | 636 | IPR001245 | GO:0004672|GO:0006468 | |
Seca4g08718 | 665 | PANTHER | CHITIN ELICITOR RECEPTOR KINASE 1-RELATED | 23 | 659 | IPR044812 | GO:0019199|GO:0045087 | |
Seca4g08718 | 665 | Gene3D | LysM domain | 148 | 202 | IPR036779 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g08718 | Seca-Chr4 | 207637388 | 207642759 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g08718 | 11 | 665 | Receptor kinase-like Gene Family | AT1G51940 | 62.575 | 0.0 | 770 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LysM | Seca4g08718 | PK_Tyr_Ser-Thr | 9.8e-49 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g08718 | - | - | gmx:100789067 | 1023.46 |