Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08713 ATGACCCGGCCCATGCCTCCACCTTCGTTAACCGCCGTGGAGAAAGAAAAAAAGGGTGTTCCATGGACTGAAGATGAACATCGGCTGTTCTTGATTGGCCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGACAAGGACTCCTACTCAAGTTGCAAGTCATGCCCAGAAGTACTTTATCCGGCAGAGTAATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGACATGTCTTCAGATCCACCTTCGGTGCCAGAAGAACAATTACTACTCCCACCTTCTGAGAACTTGCAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTATCTCTCAAGTCAGAATTTGAACCCATGGATATTACTACTACTCAAGAAAATGTGGAAGAGCCGAGTGAAACTATGATGGGAATGGGATCAAATGGATTGACACCAATGGCTCCTGGATTCTTTCCAGCTTATTTACCTGCCCCATTTTCCATATGGCCATCAATGGCTGCTCCCTTTGAACAAGTTAACAGAGGAGAGACACCTCATCATCAGGTCCTGAAGCCAACCCCAGTGGTTCACAAGGAACCTGTTAATGTTGATGAACTAGTGGGAATGTCTCATCTGAGCATTGGGGAAACAAAGGTGCTTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTATTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTAGTGGCTCGGATTTAAACAGTGGCAAGAACAGCGCCATTCAAGCGGTTTGA 804 0.4627 MTRPMPPPSLTAVEKEKKGVPWTEDEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMSSDPPSVPEEQLLLPPSENLQPCNGKSQPSLNLSLKSEFEPMDITTTQENVEEPSETMMGMGSNGLTPMAPGFFPAYLPAPFSIWPSMAAPFEQVNRGETPHHQVLKPTPVVHKEPVNVDELVGMSHLSIGETKVLDREPSPLSLKLLGEPSRQSAFHANAPVSGSDLNSGKNSAIQAV. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08713 267 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 69 IPR006447 GO:0003677
Seca4g08713 267 FunFam transcription factor MYB1R1 20 71 - -
Seca4g08713 267 PANTHER TRANSCRIPTION FACTOR KUA1 13 201 - -
Seca4g08713 267 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Seca4g08713 267 MobiDBLite consensus disorder prediction 245 267 - -
Seca4g08713 267 Gene3D - 20 71 - -
Seca4g08713 267 Pfam Myb-like DNA-binding domain 21 66 IPR001005 -
Seca4g08713 267 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Seca4g08713 267 ProSiteProfiles SANT domain profile. 22 70 IPR017884 -
Seca4g08713 267 CDD SANT 21 66 IPR001005 -
Seca4g08713 267 SMART sant 18 68 IPR001005 -
Seca4g08713 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08713 Seca-Chr4 207553820 207557935 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g08713 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08713 - - gmx:778036 406.371