Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08708 ATGATCTCTTCAAGCAGATGCACCTTCCTGAGCAACTCAGGGTTAGGTGGGTCTAACTCTAACAACAGCTTCTCTGGTGCGCAGAGAAGGCGTTTGGGTCCTTTGAGGGTGGTGTGTTTAGCCCCAAGTAGCGGTGACAGAAACGGCAGCGTTGTGATGGAGACACCGTTGAAAGAAATGAAAAACGAAACCACGGTGCCTGACGTGGACGATAACCCGATCTCCGCCGGTGGACCTCAGGATGTGTACGGCGAGGATAGGGCCACGGAGGATCAGTATGTTACTCCATGGCATGTCTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCTCACTTCAACAAAGGGCTGGCCTTCACTGAAAAGGAGAGAGATGCTCACTACTTGCGTGGTCTTCTTCCCCCAACAGTTATTCCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACGTACGCCAGTATCAAGTTCCATTGCAGAAATACATGGCAATGATGGATCTTCAGGAGAGAAATGAACGACTGTTCTACAAACTTCTTATTGATCATGTTGAAGAGTTACTCCCAATTGTCTATACTCCAACAGTTGGTGAAGCTTGCCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTACATAAGTTTGAAAGAGAAGGGTAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACGTTCAAGTCATAGTTGTAACTGATGGAGAACGGATCTTGGGTCTTGGGGATCTTGGTTGTCAGGGAATGGGAATACCAGTGGGAAAACTTTCTCTATATACGGCACTTGGAGGAGTTCGACCTTCTGCTTGCTTGCCTATTACCATTGATGTGGGTACAAATAATGAGAAGCTGCTGAATGATGAATTATATATTGGGCTAAAGCAAAGACGAGCAACTGGGCAGGAATATGCTGAACTTATGCATGAATTTATGACTGCGGTCAAGCAAAATTATGGTGAAAAAGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCAACACATCTGGTTTTTAACGATGATATTCAGGGAACTGCATCAGTGGTCCTGGCTGGACTGGTTGCTGCTCTGAAATTGGTTGGTGGAAACTTAGCTGACCACAGATTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCCCCACTGGAGGAAGTGCGCAAGAACATTTGGTTGGTGGACTCCAAGGGCCTAATTGTCAGTTCCCGTAAAGAATCACTCCAACATTTTAAGAAACCCTGGGCTCATGAACATGAACCTGTTAAAGAACTTGTAGATGCTGTTAATAAAATTAAGCCAACAGTGCTGATTGGAACATCAGGACAAGGGAGAACTTTTACCAAAGAAGTGATTGAGGCTATGGCCTCCATTAATGAGGTACTATCTCAATCTATTTATCTACCTAGTACCTACCATGCAATTTCTTCACCAGATAAGCTTAGCAATGTGTTCTATGATAATTACTTGCAGAAACCTATTATTCTTTCTCTTTCCAACCCAACATCACAATCAGAATGTACTGCTGAAGAAGCTTATAAATGGAGCCAGGGACGTGCCATTTTTGCAAGCGGGAGTCCATTTCCTCCAGTTCAATATGATGGGAAAGTGTTTGTGCCTGGCCAGGCCAATAACGCATACATATTCCCTGGATTTGGTCTTGCGGAGGCTTTGGCTGAACAAGTGTCCCAAGAGAATTTTGAGAAAGGTCTCATATACCCTCCATTCACTAACATCAGAAAGATTTCAGCACATATAGCTGCCAAGGTTGCTGCTAAGGCTTATGAACTTGGGTTGGCCACTCGTCTTCCTCAACCGAAAGATTTGGTGAAGTTTGCTGAGAGCTGTATGTATACCCCAGCCTACAGAAGCTACCGGTGA 1971 0.4414 MISSSRCTFLSNSGLGGSNSNNSFSGAQRRRLGPLRVVCLAPSSGDRNGSVVMETPLKEMKNETTVPDVDDNPISAGGPQDVYGEDRATEDQYVTPWHVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQETQVKKMIQHVRQYQVPLQKYMAMMDLQERNERLFYKLLIDHVEELLPIVYTPTVGEACQKYGSIFMRPQGLYISLKEKGRILEVLRNWPEKNVQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAVNKIKPTVLIGTSGQGRTFTKEVIEAMASINEVLSQSIYLPSTYHAISSPDKLSNVFYDNYLQKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVQYDGKVFVPGQANNAYIFPGFGLAEALAEQVSQENFEKGLIYPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRSYR. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08708 656 Gene3D - 357 656 - -
Seca4g08708 656 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 CDD NAD_bind_1_malic_enz 359 650 - -
Seca4g08708 656 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Seca4g08708 656 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Seca4g08708 656 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 655 IPR036291 -
Seca4g08708 656 SMART malic_2 168 349 IPR012301 GO:0004471
Seca4g08708 656 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Seca4g08708 656 Gene3D - 102 356 IPR037062 GO:0004471
Seca4g08708 656 PIRSF ME 62 495 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 PIRSF ME 516 656 IPR001891 GO:0004470|GO:0004471
Seca4g08708 656 SMART Malic_M_2 359 625 IPR012302 GO:0051287
Seca4g08708 656 Pfam Malic enzyme, NAD binding domain 359 624 IPR012302 GO:0051287
Seca4g08708 656 PANTHER MALIC ENZYME-RELATED 77 656 - -
Seca4g08708 656 MobiDBLite consensus disorder prediction 64 83 - -
Seca4g08708 656 FunFam Malic enzyme 102 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08708 Seca-Chr4 207391858 207397887 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08708 4 207391858 207397887 Seca4g08708 4 207391858 207397887 ECH
Seca4g08708 4 207391858 207397887 Seca4g11858 4 259229941 259235614 ECH
Seca12g06721 12 159276606 159281482 Seca4g08708 4 207391858 207397887 ECH
Seca4g00686 4 11447054 11451477 Seca4g08708 4 207391858 207397887 ECH
Seca4g08708 4 207391858 207397887 Seca4g00686 4 11447054 11451477 ECH
Seca4g08708 4 207391858 207397887 Seca10g03807 10 78716422 78718038 ECH
Seca4g08708 4 207391858 207397887 Seca2g00919 2 14175900 14177600 ECH
Seca4g08708 4 207391858 207397887 Seca4g11361 4 252330347 252332158 ECH
Seca4g11858 4 259229941 259235614 Seca4g08708 4 207391858 207397887 PCT