Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08703 ATGGTGAATGCAGAAAGAAGAGGGAAAACTATGGTGGAGCTCAAGCCTATCTCCACTGTCATCTCTTCTTTTCTCCAAATCATGAAACACCGTGGATATATAAAGGACTTTGAAGTGTATGATCCGCATAGAGTAGGAAGGATAACAGTTCAACTACAAGGTAGGATTAACGATTGCAGGGCCCTTACATACCGACAAGACATCAAGGCCAGGGATATTGAAGCCTACAGATTGCGTAATCTTCCAACTCATCAGTGGGGTTATGTTGTGATTACGACGCCTGATGGTGTTTTGGATCATGAAGCGGCCATTGAAAAGAATGTGGGTGGCCAGGTTCTTGGTTACTTTCACTAA 354 0.435 MVNAERRGKTMVELKPISTVISSFLQIMKHRGYIKDFEVYDPHRVGRITVQLQGRINDCRALTYRQDIKARDIEAYRLRNLPTHQWGYVVITTPDGVLDHEAAIEKNVGGQVLGYFH. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08703 117 Pfam Ribosomal protein S8 2 115 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca4g08703 117 Gene3D - 57 117 - -
Seca4g08703 117 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca4g08703 117 Gene3D - 1 56 - -
Seca4g08703 117 ProSitePatterns Ribosomal protein S8 signature. 87 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Seca4g08703 117 SUPERFAMILY Ribosomal protein S8 2 117 IPR035987 GO:0003735|GO:0005840|GO:0006412
Seca4g08703 117 FunFam 40S ribosomal protein S15a 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08703 Seca-Chr4 207286596 207287375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08703 1 117 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 76.923 1.22e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08703 K02957 - gmx:100306361 217.238