Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08695 ATGTCAATGTCCTGCAAGGATGGTAAAGCGGGATTGGACAATGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTTATTCGAGAGTGCCCAATCCTCTCTAACATTGAGCCTAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGGCTGCAAGCTGTAAATAGGAAGCTGACAGCAATGAACAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTATGAAAATGGCTACTTTCGTCAACATACCCAAAATACTACGCTTGCAACCAAAGACACAAGCTGTGAATCAGCCGTTACTAGTGGTCAACGCAGTTTGACAACGCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACCGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCATGTGGCCTAGTGGGCCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATAGGCCTTCCTGGTATCGTGATTGCCGAGCAGTCGATGTTCTGAACGTGCTTCCCACTGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGGGACTTCTGGTTGTTGCGATACACATCTGTTTTAGAAGATGGAAGCCTTGTGATCTGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCCAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGCCATGGACTGTTCCCGAAGTACTACGTCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCGGCAGCACTTCGAGCACTTGGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTGAACCTTTCCTTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTCTTATGTGCCAAAGCTTCAATGCTATTACAGTTGGTTGTCATGTGCCATTTCCTTGCCCAGAATGTGCCTCCAGCCATTCTACTAAGGTTTCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTTCTCATTCTCCTGAAGACACTATAATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGTACCTGTGCTGAACTTATATTCGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTTCCTTCTGGATTTCGCATAATTCCTCTTGATTCTGGAAAGGAAGCGTCCAACCCAAATCGCACCCTTGACCTGGCATCTGCGCTTGATGTTGGCCCCGCTGGAAACAGAGCATCAAATGATTTTTCTGGAAATTCTGGCAGTATGAGATCAGTGATGACAATTGCATTTGAATTTGCCTTTGAAAGTCATATGCAAGACCATGTAGCATCCATGGCACGTCAATATGTTCGCAGCATTATATCGTCTGTCCAAAGGGTAGCATTAGCACTTTCACCTTCTCATTTAAGTTCACAAGCTGGGCTTAGGACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTCGCTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTCGAGCTGCTTAAATCTAATAATGAGGGGAATGAGTCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTATGCTGCACTCTAAAGGCATTGCCAGTGTTCACTTTCGCAAACCAGGCAGGACTTGATATGCTGGAGACTACATTAGTTGCTCTACAAGATATATCATTAGAGAAAATATTTGATGATCATGGCAGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTCTTTGTCTCTCAAGCATGGGGCGACCTATCTCATATGAAAGAGTTGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGTTTTATGTTTATGAACTGGTCCTTTGTTTGA 2544 0.4556 MSMSCKDGKAGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWTVPEVLRPLYESSTVLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQLVVMCHFLAQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGISHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDVGPAGNRASNDFSGNSGSMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDHGRKILCSEFPQIIQQGFACLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV. 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08695 847 CDD bZIP 68 107 - -
Seca4g08695 847 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Seca4g08695 847 Coils Coil 71 112 - -
Seca4g08695 847 Gene3D - 11 82 - -
Seca4g08695 847 SMART HOX_1 13 79 IPR001356 GO:0003677
Seca4g08695 847 Pfam MEKHLA domain 704 846 IPR013978 -
Seca4g08695 847 Pfam START domain 160 368 IPR002913 GO:0008289
Seca4g08695 847 SUPERFAMILY Bet v1-like 159 369 - -
Seca4g08695 847 Gene3D - 194 372 IPR023393 -
Seca4g08695 847 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Seca4g08695 847 CDD START_ArGLABRA2_like 154 369 - -
Seca4g08695 847 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Seca4g08695 847 ProSiteProfiles START domain profile. 150 351 IPR002913 GO:0008289
Seca4g08695 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 847 IPR044830 GO:0003700
Seca4g08695 847 SUPERFAMILY Homeodomain-like 15 79 IPR009057 -
Seca4g08695 847 SMART START_1 159 369 IPR002913 GO:0008289
Seca4g08695 847 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Seca4g08695 847 CDD homeodomain 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08695 Seca-Chr4 206915179 206922424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08695 1 799 Homeobox Transcription Factor Family AT1G52150 85.536 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g08695 START 1.7e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08695 K09338 - zju:107428556 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08695 4 206915179 206922424 Seca4g08695 4 206915179 206922424 ECH
Seca4g11872 4 259369745 259379199 Seca4g08695 4 206915179 206922424 PCT