Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08687 ATGAAAAAAACAAGCTGTAATGAAACTGCTAGCAGTAACAGTAGCAATAGCAACAATAGTAACTCCTTCATAGCTGATCCAAGTTCGAACTTTTCAAAAGCAGAGAAAACAGAGACCAAAAAACAGAGCAGGGCCAAGAGAAACAGAGAGTGCAGCAAGCACCCGGTTTACCATGGGGTCCGAATGCGCAACTGGGGCAAATGGGTGTCCGAAATTCGTGAGCCTCGCAAGAAATCACGCATCTGGCTGGGGACTTTTGCCACCCCTGAAATGGCAGCACGAGCCCACGATGTTGCAGCTTTGAGCATCAAGGGCCATTCAGCGATTCTCAACTTCCCAAAGATAGCTCACGTGCTTCCAAGACCCCAAACCCTGACCCCACGTGACATCCAAGCGGCGGCTGCACAAGCCGCCGCCATGGTGGAATTCGACCCTCACCCATTACACTCACTTCCACCATCATCATCAGAAGAAGGGCCAGAGTCTTCAGAGCTGAGCGAGATTGTTGAATTGCCTAATATAGAAGAGAGCTTCGATTCGGTGGACTCGAGAACCGAGTTCAAATCGGTTGACTCGGTGGATAGTTGGGTGTACCCGCCATTGGGCAGTTTTTCTGACATGATGCTTGGAGTTGGAGAGCAGAGTTTTGTTATAGAGAACTCTGAGTTTGGGATTCCAAATTGGGACAGAAGATGGTTGTGA 702 0.4915 MKKTSCNETASSNSSNSNNSNSFIADPSSNFSKAEKTETKKQSRAKRNRECSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSAILNFPKIAHVLPRPQTLTPRDIQAAAAQAAAMVEFDPHPLHSLPPSSSEEGPESSELSEIVELPNIEESFDSVDSRTEFKSVDSVDSWVYPPLGSFSDMMLGVGEQSFVIENSEFGIPNWDRRWL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08687 233 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Seca4g08687 233 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Seca4g08687 233 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g08687 233 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Seca4g08687 233 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 MobiDBLite consensus disorder prediction 145 166 - -
Seca4g08687 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 178 - -
Seca4g08687 233 Pfam AP2 domain 55 106 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 CDD AP2 57 113 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 MobiDBLite consensus disorder prediction 1 55 - -
Seca4g08687 233 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Seca4g08687 233 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08687 Seca-Chr4 206743959 206744660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08687 25 200 AP2-EREBP Transcription Factor Family AT5G11590 56.410 7.36e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g08687 AP2 8.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08687 K09286 - gmx:100784419 257.684