Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08680 ATGGCTGGCATAGCATTCGGACGCTTTGATGATTCTTTCAGCTGGGCCTCCATCAAGGCCTATATTGCTGAGTTCCACTCAACCCTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGATAGCTGTTGCTGTTTGCCATGCTTTTGCTCTCTTTGTTGCTGTTTCAGTTGGAGCCAACATTTCTGGTGGCCATGTCAACCCAGCTGTGACCTTTGGGTTGGCTCTTGGGGGCCAGATCACCATCCTCACTGGTATCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTGGCATGCTTACTCCTCAAGTTTGTCACAGGAGGCTTGGCTATTCCTGTCCACAGTGTTGCTGCTGGGGTTGGAGTTGGTGAAGGAGTTGTTACTGAGATTATCATCACATTTGGATTGGTGTACACAGTTTATGCCACAGCAGCTGACCCCAAGAAGGGCTCATTGGGCACAATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATCTTAGCAGCAGGGCCATTCTCTGGTGGGTCAATGAACCCAGCACGCTCCTTTGGCCCTGCTGTTGTTAGTGGTGACTTCCATGACAACTGGATCTACTGGGTCGGACCTCTTATTGGTGGTGGTTTGGCTGGTCTTATCTATACCTATGTGTTCATGCCCTCTGAGCATGCACCTCTTGCCACTGATTTTTGA 747 0.494 MAGIAFGRFDDSFSWASIKAYIAEFHSTLLFVFAGVGSAIAYGKLTSDAALDPAGLIAVAVCHAFALFVAVSVGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVACLLLKFVTGGLAIPVHSVAAGVGVGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYTYVFMPSEHAPLATDF. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08680 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Seca4g08680 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Seca4g08680 248 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Seca4g08680 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Seca4g08680 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Seca4g08680 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08680 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08680 Seca-Chr4 206672344 206674259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08680 1 248 Major Intrinsic Protein MIP AT3G16240 82.000 7.85e-142 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08680 K09873 - gmx:100817754 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08680 4 206672344 206674259 Seca4g08680 4 206672344 206674259 ECH