Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08668 ATGTCTAGACCATTAGAACATGATTACATAGGCTTGGCAGAGAATCCATCAATGGATGGAACCTCTGACAAATTATCTTCTTCTTGTTCTTCTGCTGCTTCTGCTTCCACCCTCTCTTCTGAGGATGGGAAAAGTAAGACCTCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGTCTGCCAGGTAGTGAGTCTCCTGAGAGAAAATCAGTTGCTGGGGTCTCTCTTTTTGGGAAGGACTTGCAGAGTAAGCATAATGTTTGTTCTCTTGCAAGCCCTTTGAAAAACCTTGTGACTGGGGTTGGGGCTAAGAGGGGTTTCTCTGATGCTATTGATGGGTCTTCTTCTGGGAAATGGGTTTTCTCTGTGGCTGATGGATCTGAGGTTGATTTGGGAAAGGGAGCTGCTTCGTTCTCTCCTAGAGGAGGGAATGTTGGGAAGCCTCTTGTTGGTTTAGATACTCAAACTAACACCCAACAGGGTAATAATACCACTGCCCCAACCATCAAAGAGATTGCTGTAGTTCCCCAATCTTCTAAGCCAGCACAGGAAAAGGATAACCAGGTTGCTGGAACAAATGAGCATGCTACTGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCAGAAAGAACACGATGGCCTCTAGTTTGACAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGATTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACATATGAAGACAAAGATGGAGATTGGATGCTTGTGGGCGATGTTCCTTGGGAGATGTTCACTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAG 1080 0.4519 MSRPLEHDYIGLAENPSMDGTSDKLSSSCSSAASASTLSSEDGKSKTSSLNFKETELRLGLPGSESPERKSVAGVSLFGKDLQSKHNVCSLASPLKNLVTGVGAKRGFSDAIDGSSSGKWVFSVADGSEVDLGKGAASFSPRGGNVGKPLVGLDTQTNTQQGNNTTAPTIKEIAVVPQSSKPAQEKDNQVAGTNEHATAPAAKAQVVGWPPIRSFRKNTMASSLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08668 359 MobiDBLite consensus disorder prediction 1 69 - -
Seca4g08668 359 FunFam Auxin-responsive protein 234 351 - -
Seca4g08668 359 MobiDBLite consensus disorder prediction 19 54 - -
Seca4g08668 359 Pfam AUX/IAA family 54 350 IPR033389 -
Seca4g08668 359 MobiDBLite consensus disorder prediction 179 199 - -
Seca4g08668 359 ProSiteProfiles PB1 domain profile. 239 341 IPR000270 GO:0005515
Seca4g08668 359 MobiDBLite consensus disorder prediction 181 195 - -
Seca4g08668 359 SUPERFAMILY CAD & PB1 domains 239 340 - -
Seca4g08668 359 Gene3D - 236 352 - -
Seca4g08668 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 346 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08668 Seca-Chr4 206544795 206548440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08668 241 353 B3 DNA Binding Superfamily AT1G19850 32.174 5.25e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca4g08668 AUX_IAA 9e-93 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08668 K14484 - gmx:100804423 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08668 4 206544795 206548440 Seca4g08668 4 206544795 206548440 ECH