Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08666 ATGATGGCTGGGAACCCTAACTGGTGGAGCAATATGCATCCACCATCTTTGATCCCTCCCCAATATGTGATTGGATCTTCTTCAATTCCTTTTAATTCTTTGACAGAAAATCCAGAGCCTCCTCAATCATGGAGCCAACTTCTTTTCACTGGGTTACCTGGGGAAGAAGAGAGACTTGGTTTCAGTCATTTTCAACCTAAAAGCTCAGAAAACTGGGATGTCCAAATTCTTAATCCATCTTCCAGAGGTCCTATTCTGGATGTAATAAAGCAAGAAGTTTCTCAAAGTGGCAATCTGTATGGCCATGTGCATGAGGAATTTCAGTGTTCTGGACCTGCAGGGTCATCTTGGTCACATATGGTGCCAGTTTCTTCCCCAAGGTCTTGTGTCACTAGCTTGAGTAGTACTAGTAATAATATATTGGATTTCACTTATAACAAGCCAGATCATAGGAAGAATCAACTACCAGATCAAACATCTGAGTGTAATAGCACATCCACTGTTGGAGTTTGTAAGAAGGCTAGGGTTCAGACATCTTCAAGCCAACCACCTCTGAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAACTAGTTTCCCCATTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATCAGGTTCCTACAGGGTCAAATTGAGGCTCTCAGCACTCCTTACTTGGACAATGCATCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGGTATGCTTTATTGGATCCATCAACTCATTAGAATCAAATTAA 834 0.4185 MMAGNPNWWSNMHPPSLIPPQYVIGSSSIPFNSLTENPEPPQSWSQLLFTGLPGEEERLGFSHFQPKSSENWDVQILNPSSRGPILDVIKQEVSQSGNLYGHVHEEFQCSGPAGSSWSHMVPVSSPRSCVTSLSSTSNNILDFTYNKPDHRKNQLPDQTSECNSTSTVGVCKKARVQTSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSTPYLDNASKNMRNQQSVHGERNSVFPEDPGQVCFIGSINSLESN. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08666 277 FunFam Transcription factor bHLH123 family 186 249 - -
Seca4g08666 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 237 IPR036638 GO:0046983
Seca4g08666 277 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 245 - -
Seca4g08666 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Seca4g08666 277 Gene3D - 186 251 IPR036638 GO:0046983
Seca4g08666 277 CDD bHLH_AtbHLH_like 186 233 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08666 Seca-Chr4 206447221 206450264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08666 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.437 8.49e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08666 - - gmx:100802121 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08666 4 206447221 206450264 Seca4g08666 4 206447221 206450264 ECH