Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08659 ATGCCAACTGAAGAACAACAATTACGAATTGAAAATGCCAAACTCAAAGCAGAGGTAGAGAAGCTTCGAGCAGCTTTAGGGAAATACGCACCAGGGACAACATCCCCTTCATGTTCTGCTGGTCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGACAAGTCAAGGATAATGGACATAGTGAACCAAGCAATGGAAGAGCTCATAAAAATGGCTACTGTGGGAGAACCATTATGGCTCCGTAGCTTTGAGACTGGTCGTGAAATACTTAACTATGATGAATATTTGAAGGAATTCGCAGTTGAAAATCCAAATAGTGTAACGACAAAGAGATCCATCGAGGCCTCAAGGGACACTGGGGTTGTTTTTATAGACCTCCCTAGACTTATCCAGAGTTTTCTAGATGCTAATCAATGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGACGTTATATGCAATGGAGAAGGTTCTAACAAGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTGCAGATGCTCACACCAATGGTGCCCACAAGGGAAGTCTATTTTGTCCGTTACTGCAAACAGTTGAGTGCTGAACAATGGGCAATCGTTGATGTATCCATAGATAAAGTAGAAGACAACATTGACGCTTCTCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATACGATGTATCGCACTATTGTCAACAGTGGACTAGCCTTTGGGGCAAGGCATTGGATTGCGACACTGCAACTTCAATGCGAACGTCTAGTTTTTTTCATGGCAACAAATGTACCAATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGCAATTGGCACAAAGAATGACATGGGGTTTCTGCCATGCAATTGGGGCGTCAAGCTTCCACACATGGACTAAGGTTACGAGTAAAACAGGGGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAATGATCCTGGTGAACCTCTTGGGTTGATATTGTGTGCAGTTTCTTCTGTGTGGTTACCTGTCTCTCCAAATGTTCTATTTGATTTCTTGAGGGATGAAGCTCGCCGAACTGAGTGGGATATCATGTGCAGTGGTGCTTCAGTGCAGTCTATTGCAAATTTAGCCAAAGGACAAGACCGTGGCAATGCAGTAACCATCCAAACAATTAAAACGAAAGAAAACAATATGTGGATACTGCAAGATTGCTGCACGAATTCTTATGAGTCAATGGTGGTATATGCTCCTGTGGACATTACTGGTATTCAATCTGTGATGACTGGATGTGATTCAAGCAATCTTGCCATATTGCCCTCTGGATTCTCAATTGTCCCTGATGGCCTAGAGTCAAGGCCATTGGTGATTACAACAAGGAAGGAAGAAAAAAACACAGAGGGAGGGTCTTTATTTACAATAGCATTCCAGATCCTTACCAATGCCTCTCCTACAGCCAAGTTAACATTGGAGTCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAACATCAGAACGAGTTTACAATGTGAAGATGGTTAG 1656 0.4275 MPTEEQQLRIENAKLKAEVEKLRAALGKYAPGTTSPSCSAGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATVGEPLWLRSFETGREILNYDEYLKEFAVENPNSVTTKRSIEASRDTGVVFIDLPRLIQSFLDANQWKEMFPCLISKAATVDVICNGEGSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHTMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILQLAQRMTWGFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDEARRTEWDIMCSGASVQSIANLAKGQDRGNAVTIQTIKTKENNMWILQDCCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPLVITTRKEEKNTEGGSLFTIAFQILTNASPTAKLTLESVDSVNTLVSCTLRNIRTSLQCEDG. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08659 551 FunFam Homeobox-leucine zipper protein GLABRA 2 66 289 - -
Seca4g08659 551 Pfam START domain 68 290 IPR002913 GO:0008289
Seca4g08659 551 SMART START_1 66 290 IPR002913 GO:0008289
Seca4g08659 551 Coils Coil 5 25 - -
Seca4g08659 551 Gene3D - 126 285 IPR023393 -
Seca4g08659 551 SUPERFAMILY Bet v1-like 59 290 - -
Seca4g08659 551 ProSiteProfiles START domain profile. 57 293 IPR002913 GO:0008289
Seca4g08659 551 SUPERFAMILY Bet v1-like 320 531 - -
Seca4g08659 551 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 546 IPR042160 -
Seca4g08659 551 CDD START_ArGLABRA2_like 61 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08659 Seca-Chr4 206056397 206063216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08659 8 550 Homeobox Transcription Factor Family AT1G79840 66.362 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08659 K09338 - gmx:100809926 1023.08