Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08656 ATGGCAGCCTCTGAAGGCTCTAGCATCTCTGCCACTTCACAGGGCATTTCCCACAAAGCTGTTGATGAAGAGAAGGGTGTAAAAAATGAACAAGATAAGGCCTCAAACTCTAATTCCCACAAGCATTTTGATTTTGTGCAACTCTCAAAAGATGATTCTGTTTGTGGATCTAAGGTGCAAGAACTAGATTTCTTCAACAGTGCAGGAAAAAATGTGGTGGGTTCATCATCTTGTGGGGCTAACAACAACAACAATGATCAAGGGAGAGAGGAGAACACTGAGGAAAAATCCTCAGAGTCAAAGACTTTCACATGCAACTTTTGCAAGAGAAAATTCTCTTCTTCACAGGCCTTAGGAGGACACCAAAATGCTCACAAGCCAGAGCGTGCACTTGCAAAGCGTCGCCAAGAGATGCAAAATGCTGGTGCTTTTGGGCACCCTCATCACTTTTCATATTACACTTATCCTAGTCTTTCTACATCACCTTATTATGCATCTTATAATAAAGCACTTGGGATCAGAATGGATTCTATGATTCATAAGCCAAACTATCTGCATACCCCACCTGGCTTGAGGTATGGTCATGGACATGGTCATGCTGGTGCTTGGCCATCAATGCAAGAGATGCTAAACCTTTCTTCTGTTGATAGATTGAGAATGGAGGGTTTCAATTCAAATAGTGGAAATGGGATTCTAGGGAGTGGAACTTCGAATATAGAAGATCATGGTGGTAGTACTGTTCCATCTGTTCTCCAATTTGGAGATTCTTCTGCAAATGCTGCTAAGGGGTCAAACTCAAACATAGACAAGGCAACTCAGCCTACCACTGGTGATCATCAACCCTCCAATTCTGAATCTTCTGGACTTGATTTGTCACTCAAGCTTTAA 888 0.4223 MAASEGSSISATSQGISHKAVDEEKGVKNEQDKASNSNSHKHFDFVQLSKDDSVCGSKVQELDFFNSAGKNVVGSSSCGANNNNNDQGREENTEEKSSESKTFTCNFCKRKFSSSQALGGHQNAHKPERALAKRRQEMQNAGAFGHPHHFSYYTYPSLSTSPYYASYNKALGIRMDSMIHKPNYLHTPPGLRYGHGHGHAGAWPSMQEMLNLSSVDRLRMEGFNSNSGNGILGSGTSNIEDHGGSTVPSVLQFGDSSANAAKGSNSNIDKATQPTTGDHQPSNSESSGLDLSLKL. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08656 295 MobiDBLite consensus disorder prediction 1 42 - -
Seca4g08656 295 MobiDBLite consensus disorder prediction 18 42 - -
Seca4g08656 295 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g08656 295 MobiDBLite consensus disorder prediction 75 100 - -
Seca4g08656 295 Gene3D Classic Zinc Finger 83 145 - -
Seca4g08656 295 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Seca4g08656 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Seca4g08656 295 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Seca4g08656 295 MobiDBLite consensus disorder prediction 234 295 - -
Seca4g08656 295 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 295 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08656 Seca-Chr4 206008887 206009822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08656 60 182 C2H2 Transcription Factor Family AT5G10970 44.355 5.46e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g08656 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08656 - - lja:Lj1g3v2534910.1 262.692