Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08652 ATGGAGATTGAAGCTGACTCAAGAGATGGCTCTCTCATTCTGATCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTAGGAAGGAGGTCTGTTATCAAGGAGCGCTTCTCAAAGAAGTACAGGCATCCAATTTTGGATTCTAAATTGACACTCAAGCGCTTAAATGCGGAGGCTAGGTGCACGACCAAAGCAAGACGACTAGGGGTTTGTACTCCTGTGCTGTATGCCGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCCCTTCAGTCAAGGATGTATTTCTTGACTTCGGGTCAAGTGGTGTCATTGAAGAACGGATGGACAACATTGCATCCCAAATTGGTGATGCAATTGGAAAATTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTGAAGAATGATACCAATCAGTTGGTTCTTATTGACTTTGGTTTGAGCTTCACCTCGACTCTACCGGAAGATAAAGCTGTCGATTTGTATGTCCTGGAAAGAGCCATTCTTTCAATGCATTCTTCATGTGGGAATGTGATGGATAAGATACTTGCTGCATACCGCAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCGCAAGTGCGACAAAGAGGGCGAAAGAGGACCATGGTTGGATGA 681 0.4361 MEIEADSRDGSLILIKQGAEARVFESSFVGRRSVIKERFSKKYRHPILDSKLTLKRLNAEARCTTKARRLGVCTPVLYAVDPVLHTLTFEYVEGPSVKDVFLDFGSSGVIEERMDNIASQIGDAIGKLHDGGLIHGDLTTSNMLLKNDTNQLVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVMDKILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08652 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Seca4g08652 226 FunFam Protein kinase superfamily protein 107 223 - -
Seca4g08652 226 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 226 IPR022495 GO:0004674
Seca4g08652 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Seca4g08652 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08652 226 FunFam TP53-regulating kinase isoform X1 20 92 - -
Seca4g08652 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08652 226 NCBIfam KEOPS complex kinase/ATPase Bud32 18 220 IPR022495 GO:0004674
Seca4g08652 226 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Seca4g08652 226 Gene3D Transferase(Phosphotransferase) domain 1 103 223 - -
Seca4g08652 226 Pfam Protein kinase domain 55 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08652 Seca-Chr4 205942056 205947519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08652 15 167 MAP Kinase Kinase Kinase AT5G50180 27.439 2.18e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g08652 Pkinase 5.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08652 K08851 - csin:114273394 410.223