Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08650 ATGCCTAAATTAGGCATGGAGTTTAATACGATAGAAGAAGCTAGGAGGTTTTGGACAGATTATGGTGGAATGATTGGTTTTGATGTTAGGCAATTGTATGCAAATAAAAGCCGTGTAGATAAGTATGTTAATACAGTAAGGTTTGTATGTGCAAAGGAAGGTTTTAGAAGACTTGACAAGCGAGATTTTCAGATAAAATCTCCCCGTGAAGAAACAAGAACATATTTTGGAGTAAGAATGGGTATAAAGTTAGTTCGAGAAACAGGAAAGTTTGTAATTTATGAATTTGAAGGTAATCACAATCATATTCTGCAGACTCTAGAAACTAGTCACATGATGCCATCACAAAGAAAGATCTCAAAAGTGCAAGGGATGCAAATAGATTTAGCTGATGATTCTGGTATAAGACCAAAAGCAACCATTAAATTGATGAGTAAACATGCAGGTGATAAAGATCTCAAAAGTGCATATGCATTTTAG 480 0.3458 MPKLGMEFNTIEEARRFWTDYGGMIGFDVRQLYANKSRVDKYVNTVRFVCAKEGFRRLDKRDFQIKSPREETRTYFGVRMGIKLVRETGKFVIYEFEGNHNHILQTLETSHMMPSQRKISKVQGMQIDLADDSGIRPKATIKLMSKHAGDKDLKSAYAF. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08650 159 Pfam FAR1 DNA-binding domain 16 105 IPR004330 -
Seca4g08650 159 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08650 Seca-Chr4 205930072 205930551 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08650 FAR1 3.8e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08650 - - aip:107620925 193.356