Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08638 ATGAACGGTGCAGGGAGACAGGGGCTGAGATCTGGTGCGACGGGGGTGCACCACCAGCGCCAGTACTCCGATAACTTTCTCGACGGCTCCTCCACCGGTAACCGGTGGCTCCAATCTGCCGGCCTTCAACACCTCCAATCCTCCGCCAATCCCCTTCCTCCGCTTCAGGACTATAACTTGTACGGCGGCGGCGGCGCCGGAGCGCAGGGAGGGAGAATGTACAGGAATGCGCAGAGGAGCTTTAATGGAGGAACCGATTATTACATGGAACCCTCCACGCCACCCGGTGCTTACCGTACTTCAACGCAGAAAAAGAACGGCGAAGATTCTCCCGGTGATTTCAGCCCCGGCCTGTTGGATCTGCATTCATTTGACACTGAGCTTCTTCCTGAGATGCCAGCCTCCAATGCATATGATGCCAACTCCCTGTATCAACCTATGCGGGGTAGAAGCTTTGATGACTCTGATCCTTACATGATGAACAAACAGGCTGCCAAAGCCCGTGCTCCTGAAAACATATTGAAAAGTTTTCCTGCAGACAAAGAGAAATCAAGTTCTGTAGCAAAGATTAAAGTTGTGGTTCGTAAGAGACCAATGAATAAGAAGGAATTAGCAAAGAATGAAGAAGATATTATAGATACACATTCCAATTCTTTGACGGTACATGAAACTAAACTGAAGGTTGACCTAACTCAGTATGTGGAAAAGCATGAATTTGTTTTTGACGCTGTCTTGAATGAAGAGGTTACGAATGATGAGGTGTATCGTGAAACAGTGGAGCCCATAGTTCCAATAATCTTCGAACGCACTAAGGCAACTTGCTTTGCATACGGGCAAACAGGAAGTGGAAAAACTTATACAATGAAGCCACTGCCACTTAAAGCATCAAGGGACATCCTAAGATTGATGCACCATACTTACAGGAATCAGGGATTTCAATTGTTTGTGAGTTTCTTTGAAATATATGGCGGGAAGCTTTTTGATCTCCTTAACGATCGAAAAAAACTTTGCATGAGGGAGGATGGTAAGCAGCAAGTTTGCATTGTGGGATTGCAAGAGTACCGAGTATCTGATGTGGAGAATATCAAAGATTTGATTGAGAAAGGAAATGCCACAAGAAGTACAGGCACCACGGGTGCAAATGAGGAATCATCACGGTCACATGCAATACTTCAGCTTGCTATCAAGAGGTCAGTTGATGGCAATGAATCCAAACCTCCCCGTCTTGTTGGCAAGCTCTCTTTCATAGATCTTGCTGGAAGTGAGCGTGGAGCAGATACAACAGATAATGACAAACAGACAAGAATAGAAGGTGCTGAAATCAATAAGAGCTTACTTGCCCTAAAGGAATGCATAAGAGCTCTTGATAATGACCAAGGACACATCCCTTTCAGAGGCAGTAAGCTGACTGAAGTTTTGAGGGATTCATTTGTTGGCAATTCCCGCACTGTTATGATATCATGCATATCACCAAGCACTGGTTCATGCGAACATACTCTGAATACATTAAGATATGCTGACAGGGTAAAAAGCTTGTCAAAAGGGAACAATTCGAAGAAGGATGTTTTGTCTTCGAATTTCAACCTTAAAGAATCAACTACGGTTCCCTTATCTTCCGTTACTGCATCAGCCTATGAGGATCGCACAGCTGATGCATGGAATGATGAAAATGAAGGAGATGATTTTAGCCCACCTGAAGAGTACTACGAGCAGGTGAAGCCATCATTGAAGAAAAATGGAAAAGTGGAATCATTTACTACAACAGATGACAAATTGAAGAAACCTAGTAGTCAGATCAAATGGAAGGACCTCCCAAAAGTTGAACCTAAAACCACAAATTCAGAGGATGATTTAAGTGCCCTCTTACAGGAAGAAGAGGACCTTGTAAATGCTCACCGGACACAAGTAGAGGAGACTATGAATATTGTTAGAGAGGTATTTAAATTGTCTCTTTTATTATTCTATCATTTCATTTATTCTTTTAGGGAATTAGTCCATGTGTTTCAACCTTCGAAATAA 2019 0.4349 MNGAGRQGLRSGATGVHHQRQYSDNFLDGSSTGNRWLQSAGLQHLQSSANPLPPLQDYNLYGGGGAGAQGGRMYRNAQRSFNGGTDYYMEPSTPPGAYRTSTQKKNGEDSPGDFSPGLLDLHSFDTELLPEMPASNAYDANSLYQPMRGRSFDDSDPYMMNKQAAKARAPENILKSFPADKEKSSSVAKIKVVVRKRPMNKKELAKNEEDIIDTHSNSLTVHETKLKVDLTQYVEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSDVENIKDLIEKGNATRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSTGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSNFNLKESTTVPLSSVTASAYEDRTADAWNDENEGDDFSPPEEYYEQVKPSLKKNGKVESFTTTDDKLKKPSSQIKWKDLPKVEPKTTNSEDDLSALLQEEEDLVNAHRTQVEETMNIVREVFKLSLLLFYHFIYSFRELVHVFQPSK. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08638 672 PRINTS Kinesin heavy chain signature 412 430 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 PRINTS Kinesin heavy chain signature 378 395 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 PRINTS Kinesin heavy chain signature 269 290 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 PRINTS Kinesin heavy chain signature 462 483 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 PANTHER KINESIN-RELATED PROTEIN 6 30 557 IPR027640 GO:0003777|GO:0007018
Seca4g08638 672 ProSitePatterns Kinesin motor domain signature. 411 422 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca4g08638 672 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g08638 672 FunFam Kinesin-like protein 171 515 - -
Seca4g08638 672 CDD KISc_KIF2_like 189 510 - -
Seca4g08638 672 SMART kinesin_4 187 518 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 Gene3D Kinesin motor domain 165 515 IPR036961 -
Seca4g08638 672 ProSiteProfiles Kinesin motor domain profile. 189 512 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 MobiDBLite consensus disorder prediction 84 119 - -
Seca4g08638 672 Pfam Kinesin motor domain 195 511 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g08638 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 512 IPR027417 -
Seca4g08638 672 MobiDBLite consensus disorder prediction 95 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08638 Seca-Chr4 205745497 205751290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08638 189 512 Calmodulin-binding Proteins AT5G65930 34.731 3.93e-44 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08638 K10393 - gmx:100810966 1183.32