Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08636 ATGGACTTCTGGGCAGATTTTGTTGTGAGCAGTGCTGGAAGAGAGTTTATAGCAGGAGGCTTTGGAGGCACAGCTGGTATAATCTCCAGTTACCCGTTGGACACCCTCCGCGTGATACAACAACAATACAGCAGAAACTCTGCCATTAGCATCCTTAGAAATGTGTTGACCAAGGAAGGACCAGTAGCTCTGTACCGTGGCATGAGTGTCCCTTTGGCCTCTGTTATTTTTCAGAATGCTATGGTTTTCCAAAGTTATACAATTTTCACAAGGGCATTTAGCTCATCTCTTTCTATTAATGGCCCTCCTTCCCTCAAGGATGTTTCTTTAGGAGGACTTGGTGCAGGTGCTCTCCAAAGCCTATTGATCACCCCTGTTGAGTTGGTTAAAATTCGTCGTCAGTTGCAAAACAGCATAGGCCAATTGGCAGAAACCAGAAAGGGCCCTCTTGACATTGCAAAGAACATTTGGAAAAATGAGGGCACTCGTGGAATTTATCGAGGACTTGGCATCACTATGCTTAGAGATGCACCTGCACATGGCTTCTACTTTTTCACATATGAATACACGAAGGAAAAGCTTCACCCTGGTTGTAGAGAAAGCAGTGAAGAAAGCATGAGTACTATGTTTATAGCAGGAGGATTAGCCGGGATAGCGAGTTGGATTTTCAACTACCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAGACACCTTCTTCAATGAAATACAAAGGTATTTTGGATTGTGTCCTTAAGATCATTAAAGAAGAAGGATGCGTTGTGCTATGGAGGGGTTTAGGAGCTACCATTGTTAGAGCATTTGTCATGAATAGTGCTATATTTCCTGCTTATGAGATCTCTCTAAGGTGTCTCAAAGAACTGAAGCATTCAAATGCATGA 903 0.4297 MDFWADFVVSSAGREFIAGGFGGTAGIISSYPLDTLRVIQQQYSRNSAISILRNVLTKEGPVALYRGMSVPLASVIFQNAMVFQSYTIFTRAFSSSLSINGPPSLKDVSLGGLGAGALQSLLITPVELVKIRRQLQNSIGQLAETRKGPLDIAKNIWKNEGTRGIYRGLGITMLRDAPAHGFYFFTYEYTKEKLHPGCRESSEESMSTMFIAGGLAGIASWIFNYPTDVIKTRLQAQTPSSMKYKGILDCVLKIIKEEGCVVLWRGLGATIVRAFVMNSAIFPAYEISLRCLKELKHSNA. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08636 300 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Seca4g08636 300 Pfam Mitochondrial carrier protein 11 94 IPR018108 -
Seca4g08636 300 Pfam Mitochondrial carrier protein 205 293 IPR018108 -
Seca4g08636 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 193 IPR018108 -
Seca4g08636 300 Gene3D Mitochondrial carrier domain 12 299 IPR023395 -
Seca4g08636 300 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Seca4g08636 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Seca4g08636 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Seca4g08636 300 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Seca4g08636 300 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Seca4g08636 300 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Seca4g08636 300 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Seca4g08636 300 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08636 Seca-Chr4 205730117 205734989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08636 1 292 Antiporters AT1G79900 60.751 2.94e-120 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08636 K15109 - gmx:100801221 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08636 4 205730117 205734989 Seca4g08636 4 205730117 205734989 ECH