Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08635 ATGGACTTTTGGGCAGAATTTGTTACAAGCAGTGCTGGTAGAGAGTTTGTAGCTGGAGGCTTTGGAGGCACAGCTGGTATCATCTCCAGTTATCCATTGGACACCCTCCGCATCATACAACAGCAATCCAACAAAACCTCTGCTGTCACCATCCTTAAAAATGTGTTGTCCAGGGAAGGACCAGCAGCTCTGTACCGTGGGATGGGTGTGCCATTGGCCTCTGTTACTTTTCAGAATGCTATGGTTTTTCAGAGTTATGCAATTTTCACAAGGGCATTTAGCCCGTCCATTTCTCCTAATGCCCCTCCTTCCCTCAAGTATGTTGCTTTAGGAGGACTAGGTGCCGGTGCTCTCCAAAGCCTATTGGTCTCCCCTGTTGAGTTGGTTAAGATTCGTCGTCAATTACAGAACAGTTCAAACCAATTGACAGAAACCAAAAAGGGTCCTCTCGAGATTGCTCACAACATTTGGAAAAGGGAAGGCATTCGTGGCCTTTATCGAGGACTTGGCATCACTATGCTCAGAGATGCACCTGCCCATGGCTTCTATTTCTGGACATATGAGTACACAAGGGAAAAGCTTCACCCTGGTTGCAGAGAAAATTGTCAAGAAAGCATGAATACTATGTTTATAGCAGGAGGATTAGCCGGGATAGCGAGTTGGATTTTCAATTATCCTACAGATGTTATAAAGACAAGATTGCAGGCTCAGACACCTTCTTCAATGAAATACAAAGGTATTTTGGATTGTGTCCTTAAGATTATTAAAGAAGAAGGATCCATTGTGCTATGGCGGGGTTTTGGAGCTACCCTTGTTAGAGCATTTGTCATGAACAGTGCTATATTTCCTGCTTATGAGATCTCTTTAAGGTGTTTATTTAATAATTGA 888 0.4347 MDFWAEFVTSSAGREFVAGGFGGTAGIISSYPLDTLRIIQQQSNKTSAVTILKNVLSREGPAALYRGMGVPLASVTFQNAMVFQSYAIFTRAFSPSISPNAPPSLKYVALGGLGAGALQSLLVSPVELVKIRRQLQNSSNQLTETKKGPLEIAHNIWKREGIRGLYRGLGITMLRDAPAHGFYFWTYEYTREKLHPGCRENCQESMNTMFIAGGLAGIASWIFNYPTDVIKTRLQAQTPSSMKYKGILDCVLKIIKEEGSIVLWRGFGATLVRAFVMNSAIFPAYEISLRCLFNN. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08635 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Seca4g08635 295 Gene3D Mitochondrial carrier domain 8 294 IPR023395 -
Seca4g08635 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
Seca4g08635 295 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Seca4g08635 295 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Seca4g08635 295 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Seca4g08635 295 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Seca4g08635 295 Pfam Mitochondrial carrier protein 11 93 IPR018108 -
Seca4g08635 295 Pfam Mitochondrial carrier protein 208 294 IPR018108 -
Seca4g08635 295 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Seca4g08635 295 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Seca4g08635 295 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 292 - -
Seca4g08635 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 193 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08635 Seca-Chr4 205700427 205702381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08635 1 295 Antiporters AT1G79900 63.176 2.31e-125 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08635 K15109 - gmx:100812034 435.647