LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g08634	ATGAGCAGAATTCTCCTTCTCCCTATATTGCTATTCCTAATCATCTTACTTCACCCCTCTGAAGCCGACGAAGTTGCCGTTTACTGGGGTCAAAACACCAATGAGGGAAACCTTACTGAAACATGCTTAACAGGGAAATACTCTTATGTCAACATAGCCTTCCTTTCCACCTTTGGGAATGGCCAAACTCCTCAAATCAACCTGGCAGGTCATTGTGACCCTTCTTCTAATGGTTGCACTAAGATTGGGACAGACATTAAGAATTGCCAAAAGAAAGGGATCAAGGTGATGCTCTCCATTGGAGGAGGAACTGACACCTATTCTCTATCTTCCTCTGAGGATGCTAAAATTGTTTCAGATTACTTGTGGAACAATTTCTTGGGTGGCTCCTCCTCATCACGCCCACTTGGGGATGCAGTATTAGATGGCATTGATTTTGACATACAGCTAAGTACATCGCATGTGGATGATCTTGCACTTTACCTAAAGTCACACACAACAAGAAATCAGACTGTGTACTTATCTGCAGCACCTCAGTGTCCATTTCCTGATTCTTCACTGGGTAAGGCCCTTAATACTAGCCTTTTTGAGTATGTCTGGGTACAATTCTACAATAATCCTCCATGTGATTATACACAAGGAAATTTCGATAACTTTGTAAGTACATGGAACCTATGGACGACAATTTTAGATGGATCGAAAATTTTTTTGGGGTTGCCAGCAGCTGAAGAAGCAGCTGCAAGCGGTTATGTTCCACCTGGTGTATTAACATCTAAGATCTTACCTGTTATAAAGAAGTCACCAAACTATGGAGGAGTAATGTTGTGGTCAAGGTACGAGGATAAATTGAGCGGATACAGTACCAACATTACAATAAGAGTTACACCACAAATTCCTCCTCCTCCTCCTCCTGTTACACCGCAAATAAATCCTATATGTAATACAAAGCTAAGTCTTACTGGGTGTAGAAGCCATGACGGTGGTTTCGTGGAGCGTTTTGGTTACATGTCCACGGTTGGCATCAAAGTTTATGATGGCTTGAACAATGGTACCAATTGCTGTGAGATCATATGTAGGAACAATTGTTCCTGCAATGCGTATGCCTCAATAAATCACGTGAACAACACTGGATGCCAGATTTGGGGCAAAGGATCGAAATTCATTAGTGATTCTGGGGGAAAAGCACAGCCAATCTACATTGTTAAACACAAAGTAAACAGGTGGTGGATATGGCTCATCATTGGGGTGGGAGCAGCCTTTGCAATACCTGTGATCTTCTATTTATGTTGTGCCTTGTGGAGAAAATATAAAGCACAAGTGGATAGAAAAATAATGCAGAAGGAGATATTACATGAGATTGGTGGTAATGCAATGCTTTCAATGGTGTACGGCAAAGTCAAGAAAAGTAAGAACAGGGAAAAGACAAGCAACGAGGTCCAAATATTCACTTTTGAAACCATTGTTGCTGCCACAAACAATTTCTCAGTTGCTAATAAGCTAGGAAAGGGTGGTTTTGGTCCTGTTTATAAGGGAACATTGAGTGATCAGCAAGAGGTAGCAATAAAGCGACTTTCTAAAAGTTCAGGACAGGGGCTGATAGAGTTTAAGAATGAAGCTAAGCTCATGGCCAAACTCCAGCACACTAATCTTGTAAAGCTTTTAGGCATCTGCATCCAGAGAGATGAAAGAATATTAGTCTATGAGTACATGTCTAACAAGAGCTTAGACTTCTACCTATTTGATTCAATTAGAAAGAATTTGCTAGACTGGAAAAAACGCTTGAATATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTCCACAAGTATTCAAGACTAAAGGTGATACATCGGGACCTGAAAGCAGCCAATATATTACTTGATGAAGAGATGAATCCAAAAATATCTGACTTTGGCATGGCTAGAATATTTGGTCTAAGAGCATCAGAAGAAAACACAAACAGAGTTGTTGGTACATATGGTTATATGGCTCCAGAGTATGCAATAAATGGTATTGTGTCTATCAAAATAGATGTATTTAGCTTTGGTGTATTGCTATTAGAGATTCTCAGTAGCAAGAAGAATAATAGTCGCTATCATTCAGATCGCCCACTCAGCCTCATAGGATTTGCATGGCAGCTCTGGAATGAAGGTAAACCTCTTGAGCTAGTAGACCCAGCATTAAGTGAATTAAGTTCTCAGAATGAAGTTTTGAGATGTATTCATATTGGCCTCTTGTGTGTACAAGATCAAGCAAATGATAGGCCTACCATGTTAGATATTGTTTCTTTTTTATCAAATGATACTATCCAACTTCCCCAACCAAAGCAGCCAGCATTCTTCATCAATGTGGTTGTAGAGGAGTCAGAGCTTCCTTATAGCAGGCAAGAACATCATTCCTTAAATAGTATAACAATTTCTAATATGTCTGGAAGATAA	2439	0.3993	MSRILLLPILLFLIILLHPSEADEVAVYWGQNTNEGNLTETCLTGKYSYVNIAFLSTFGNGQTPQINLAGHCDPSSNGCTKIGTDIKNCQKKGIKVMLSIGGGTDTYSLSSSEDAKIVSDYLWNNFLGGSSSSRPLGDAVLDGIDFDIQLSTSHVDDLALYLKSHTTRNQTVYLSAAPQCPFPDSSLGKALNTSLFEYVWVQFYNNPPCDYTQGNFDNFVSTWNLWTTILDGSKIFLGLPAAEEAAASGYVPPGVLTSKILPVIKKSPNYGGVMLWSRYEDKLSGYSTNITIRVTPQIPPPPPPVTPQINPICNTKLSLTGCRSHDGGFVERFGYMSTVGIKVYDGLNNGTNCCEIICRNNCSCNAYASINHVNNTGCQIWGKGSKFISDSGGKAQPIYIVKHKVNRWWIWLIIGVGAAFAIPVIFYLCCALWRKYKAQVDRKIMQKEILHEIGGNAMLSMVYGKVKKSKNREKTSNEVQIFTFETIVAATNNFSVANKLGKGGFGPVYKGTLSDQQEVAIKRLSKSSGQGLIEFKNEAKLMAKLQHTNLVKLLGICIQRDERILVYEYMSNKSLDFYLFDSIRKNLLDWKKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAANILLDEEMNPKISDFGMARIFGLRASEENTNRVVGTYGYMAPEYAINGIVSIKIDVFSFGVLLLEILSSKKNNSRYHSDRPLSLIGFAWQLWNEGKPLELVDPALSELSSQNEVLRCIHIGLLCVQDQANDRPTMLDIVSFLSNDTIQLPQPKQPAFFINVVVEESELPYSRQEHHSLNSITISNMSGR.	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g08634	812	SMART	serkin_6	494	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08634	812	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	459	569	-	-
	Seca4g08634	812	CDD	GH18_hevamine_XipI_class_III	24	290	IPR045321	-
	Seca4g08634	812	FunFam	Acidic endochitinase SE2	23	294	-	-
	Seca4g08634	812	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	615	627	IPR008271	GO:0004672\|GO:0006468
	Seca4g08634	812	Pfam	Glycosyl hydrolases family 18	25	281	IPR001223	GO:0005975
	Seca4g08634	812	Pfam	Protein tyrosine and serine/threonine kinase	496	765	IPR001245	GO:0004672\|GO:0006468
	Seca4g08634	812	Pfam	Domain of unknown function (DUF3403)	767	812	IPR021820	GO:0004674
	Seca4g08634	812	Gene3D	Glycosidases	23	293	-	-
	Seca4g08634	812	Pfam	PAN-like domain	349	382	IPR003609	-
	Seca4g08634	812	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	570	773	-	-
	Seca4g08634	812	Gene3D	Phosphorylase Kinase; domain 1	467	569	-	-
	Seca4g08634	812	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	23	297	IPR001223	GO:0005975
	Seca4g08634	812	SUPERFAMILY	(Trans)glycosidases	20	291	IPR017853	-
	Seca4g08634	812	Gene3D	Transferase(Phosphotransferase) domain 1	570	776	-	-
	Seca4g08634	812	ProSiteProfiles	Protein kinase domain profile.	494	770	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g08634	812	SUPERFAMILY	Protein kinase-like (PK-like)	476	797	IPR011009	-
	Seca4g08634	812	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	324	792	-	-
	Seca4g08634	812	CDD	STKc_IRAK	500	765	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g08634	Seca-Chr4	205680498	205684441	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g08634	10	294	Glycoside Hydrolase	AT5G24090	61.724	2.13e-128	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca4g08634		PK_Tyr_Ser-Thr	2.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g08634	-		-	lang:109358482	1241.1