Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08633 ATGGCTCCAGAGTATGCTTTAAATGGCAGAGTCTCAACCAAAATTGACGTTTTTAGTTTTGGAGTATTGATGCTTGAGATTGTGAGTGGAAAAAAGAATGCTAGTAATTATGATTCGGATTATCCCCTCAATCTCATAGGACATGCTTGGCAATTATGGAATAAGGGCACAGCTTTAGAATTAATAGACCCTATATTGAAGGGATCATGTGCTGTCAATCAAGTGTTGAGAAGCATTCATATTAGCCTTTTGTGTGTGCAAGATCAAGCTAAAGATAGACCAACTATGTCAGATGTGGTATCTTTCCTGTCAAGCGAGGCTATACTTTTAGCTGAACCGAAACAACCAGCTTTCTTCACTGATAATGGGGTGAATGGACCTAAATGTCCTATCACTAATAACAATAATCATTCTCTAAATAGTGTAACAATTTCAACAATGAGTGGTAGATAA 453 0.3709 MAPEYALNGRVSTKIDVFSFGVLMLEIVSGKKNASNYDSDYPLNLIGHAWQLWNKGTALELIDPILKGSCAVNQVLRSIHISLLCVQDQAKDRPTMSDVVSFLSSEAILLAEPKQPAFFTDNGVNGPKCPITNNNNHSLNSVTISTMSGR. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08633 150 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08633 150 SUPERFAMILY Protein kinase-like (PK-like) 1 120 IPR011009 -
Seca4g08633 150 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Seca4g08633 150 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 150 - -
Seca4g08633 150 Pfam Protein tyrosine and serine/threonine kinase 1 103 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08633 Seca-Chr4 205671464 205672323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08633 1 118 Receptor kinase-like Gene Family AT4G23230 52.542 1.48e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08633 PK_Tyr_Ser-Thr 1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08633 - - vun:114184796 232.261