Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08632 ATGGGAACATTGCATGTAGGAAGAAGCATAGGGAGAGCCCTTCTCATCCTCACTCTGACATTCACATCAAACATCACAAGGCTTCAGTGTTTCAGCTCTGGTGATGACACACTAATGCAAGGAGATTCCTTTGAAGTGGGAAGACTAACCTCAGCTGCTGAGGTCTACAGACTAAGTTTCTTCACTGTAAAAGGCGATGAAAGTGGAAGATTGTACTTAGGAATAAATTATAACAGAGGTGGTTGTGTCTGGCTTGCCAACCAAAACATCCCACTTTATAAGCGACAAGCAAAGCTTGTAATTGATGATTATGGTAGCTTGAAAGTATACAAGAATGAGACAGAGGCTATAGTGTTATACTCAAGCAAATCTGCCCAAAAGATCAATGCTAGTGCCACTTTGCTCAATACAGGAAACTTTGTACTGAGCCAAATGAACACAGATGGTACTGCAAATCAGACTCTCTGGCAAAGTTTTGATCACCCCAATTACATGTTATTGCCAGGAATGAGACTAGGATTCAACAGGGTAACAGGGCAGAATTGGACCCTAACATCATGGACAGGCTCAAACACACCTGCTCCAGGTTCCTTCACTCTTGGTGTGGAGTCTGTGGACCCAAACAACAAAGAGCAATTGGTTATGAGGTGGAAAGACAGCATCTACTGGACCAGTGGGCCACTTATTGATGGAAGTTTTAGCAATTTGAACACAACCTCAGGGAGATATGACATAAATTTCACCTATGTTTCAAATGAGAATGAAACATATTTCAGTTATAATTCCACATCACCCTCGGGTGAATTTGTTTTCATTGGTTTGAATCCACTTGGTCAATTATATGGCAAAGCTTCTGTCTCTTGCAACAGTGATAACCCTTCACGTGTTAGTGGATGTGTGGCTCAAAGGTTCACAACCTGCAGGAACCAAGATACTTATGTGTCCATGGCCAACTTTAAGTACGGTAATATGTCCCAAGAAGGGTACAAGAATGAGGAATTCGAAAAGCTTTCCCTTTATGATTGTGGGGTGAAGTGCTTGAATAGTTGCTCTTGTTTTGCCTACTCCTCCACAACCGAAGATAACACTGGCTGCCAGATGTGGGATAGAGGGGCCAAATTTGCCACATCTTCTAGTGGGAGACCAGTTTACTTCATCTCTGAAAATATCATTAACAATGGAACTTCCATACAAGGAAATTCTAAAGCAAATAAGAGAAAGTTATGGATAGCAAGTGTGATTGGAGGAGCTATACTGATACTCGTGTCATCCTTTGGGCTCTATCTATTGTGGAGGAAACGAAGAATAGAAGAAGAAAAAATGAAGCAGAGGAAGATATTATATGAGATTGAAGGAACTGCAACGCCTTCCCTTGTAAACGGCAAACACAGAAGAAAAAATAAAATTGAAACCATGAACCATGGATTGCACATGTTCAGCTTTGAAAGCATTGAATTGGCAACTGATAATTTCTCTTCAGCACATAAGTTGGGTGAGGGTGGATTTGGAACTGTTTATAAGGGACAATTACTTGATGGGAGAGAAATAGCAATAAAGAGACTTTCTACAAGCTCAAGGCAAGGGTTAACAGAGTTCAAGAATGAGGTTAAATTAATTGCCAAATTCCAACACACTAACTTGGTCAAGCTTCATGGTTTTTGCATTGAAAGAGAAGAAAGGATGTTGATCTATGAATATATGCCCAACAAAAGTTTGGACTTTTATCTTTTTGGTATGCTATCCTTTACTTGA 1752 0.403 MGTLHVGRSIGRALLILTLTFTSNITRLQCFSSGDDTLMQGDSFEVGRLTSAAEVYRLSFFTVKGDESGRLYLGINYNRGGCVWLANQNIPLYKRQAKLVIDDYGSLKVYKNETEAIVLYSSKSAQKINASATLLNTGNFVLSQMNTDGTANQTLWQSFDHPNYMLLPGMRLGFNRVTGQNWTLTSWTGSNTPAPGSFTLGVESVDPNNKEQLVMRWKDSIYWTSGPLIDGSFSNLNTTSGRYDINFTYVSNENETYFSYNSTSPSGEFVFIGLNPLGQLYGKASVSCNSDNPSRVSGCVAQRFTTCRNQDTYVSMANFKYGNMSQEGYKNEEFEKLSLYDCGVKCLNSCSCFAYSSTTEDNTGCQMWDRGAKFATSSSGRPVYFISENIINNGTSIQGNSKANKRKLWIASVIGGAILILVSSFGLYLLWRKRRIEEEKMKQRKILYEIEGTATPSLVNGKHRRKNKIETMNHGLHMFSFESIELATDNFSSAHKLGEGGFGTVYKGQLLDGREIAIKRLSTSSRQGLTEFKNEVKLIAKFQHTNLVKLHGFCIEREERMLIYEYMPNKSLDFYLFGMLSFT. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08632 583 ProSiteProfiles Protein kinase domain profile. 491 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08632 583 Pfam D-mannose binding lectin 82 187 IPR001480 -
Seca4g08632 583 SUPERFAMILY Protein kinase-like (PK-like) 468 580 IPR011009 -
Seca4g08632 583 Pfam PAN-like domain 307 370 IPR003609 -
Seca4g08632 583 Pfam Protein tyrosine and serine/threonine kinase 494 576 IPR001245 GO:0004672|GO:0006468
Seca4g08632 583 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 191 IPR036426 -
Seca4g08632 583 ProSiteProfiles Bulb-type lectin domain profile. 35 155 IPR001480 -
Seca4g08632 583 Gene3D Phosphorylase Kinase; domain 1 454 566 - -
Seca4g08632 583 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Seca4g08632 583 ProSiteProfiles PAN/Apple domain profile. 307 389 IPR003609 -
Seca4g08632 583 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 292 576 - -
Seca4g08632 583 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 566 - -
Seca4g08632 583 SMART blect_4 35 162 IPR001480 -
Seca4g08632 583 Gene3D - 31 159 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08632 Seca-Chr4 205668316 205671014 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08632 461 577 Receptor kinase-like Gene Family AT4G23130 56.410 1.28e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08632 B_lectin 9.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08632 - - fve:101309951 446.047