Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08631 ATGCTCCTTACCTTCTTAATTCTCCCTGTAATTGAGAAATCTAATGCAGAATCAGAGGACATTGCCATTTACTGGGGTCAAAATGATGATGAGGGGAGCCTAACAGAAACATGTGCAACAGGAAAATACTCTTATGTAATCATAGCCTTCCTGAACAAATTTGGGAATGGCAAAACCCCTGAAATCAACCTAGCAAGTCATTGTGACCCTGCTTCCAATGGTTGCACCACGTTAAGCACACACATCAGGAATTGCCAATTGCAAGGGATCAAAGTCTTTCTCTCCATTGGAGGTGCAGATGGAGATTATGGTCTAGCTTCCTCTGATGATGCTAAAAATGTTTCTGATTACTTGTGGAACAATTTCTTAGGGGGTGGCACTGGTAGCTCATCTTCACGCCCACTTGGGGATGTTATATTAGATGGCATTGATTTTGATATTGAGAATTCAACAGGACAACATTGGGAGAAACTTGCACATGACCTCAAGTCACGTAGCACCTCAACACAAGTTGTTTACTTAAGTGCAGCACCTCAGTGTCCATTTCCTGATGGTGAACTTGGTATTGCACTTGACACAGGGATTTTTGACTATGTTTGGATACAGTTTTATAATAATCCTGATTGTGAGTATACCCAAAGCAATGTCAATAACTTTTTGAATTCATGGAATCAATGGACAACATCATTGAAAGTGGGAAAAGTCTTCTTGGGGTTGCCAGCATCGCCTGCAGCAGCAAGTACTGGCTATGTTCCAGCTGATTTGTTGGCATGTGACATTCTTCCTGTCATAAACAAGTCCCCTAACTATGGTGGTGTGATGTTGTGGACAACATACTATGATAAACAAAGTGGATACAGCACCCACATCAAAAGTTCTCTTTGCACACATCAAAACCCTCCTGAATGCAGAGGAAATGATTGCCACAAAGCAAAGTGGTGGATATGGCTTATCATTGGGGTGGTAGCAACCCTTGCAATATCTCTCATCTTCTACTTAGGTTGTACCTTACGGAGAAAAGACAAAGCAGAAGTGGATGGAAAATTGAACCAAAACAAGTCGTTACATGAATTTGGAGGCAATACAGTACTTCCTGACAAAGCAAGAAACATTGAAATAGAGGGAGGGACTGGTAATGAGGCCAAAATGTTCAGTTTTGATAGCATCATTGCTGCCACAAACAATTTTTCACCTACTAATAAGCTGGGAGAGGGTGACTTTGGTCCTGTTTATAAGGGAACATTAAAAGATGGGCAAGAAATAGCAATAAGGCTACTTTCCACAACTTCAAGAGAAGGGTTGATAGAGTTCATGAATGCAGCTAAGCTCATGGCCAAACTCCAGCACAGTAATCTCATAAGGCTTTTGGGGTTCTGCTTCCAGAAAGATGAAAGAATACTAGTGTATGAGTACATCTCCAAAAGAAGTTTGGACTTCTACTTGTTTGATGAAAATAGAAAGAATGAGCTAGATTGGAGAAAACGAACTAACATCATTGAAGGCATTGCTCAAGGGCTATTTTATCTTCACAATAATTCAAGACTACAAGTGATACAACAGAACTTGAAGGCAAGCAATATATTGCTCGATGAAGAAATGAATCCTAAAATATTTGATTTTGGCATGGCTCAAATGTTTGGTTTAAACCATCAAGAAGAAGATACAAATGGAATTGTTGGCAAATATGGGTGCATGTCATCAGATGATGCAATCAATGGTATTTTGTCTGTTAAAACAGATGTTTTAAGTTTTGGTGTTCTCATATTGGAGATTCTTAGTGGCAAGAAGAGTAATAATCATTATCATTCAGCTGAACCACCAAATCTAATAGGATATGCATGGCAGCTTTGGAACTCAGGTCGAGCTCTAGAGCTAATAGACTCAGCACTAAATGAATCATGCACTCCAAATGAAGTATTGAGATATATTCATATTGGCCTCTTGTGTGTACAAGGTCATGCAGCAGACATACCTACCATGTTAGATGTTGTTTCTTTTCTCTCAAATGATACAATTGAACTTGCTCAGCCAAAACAGCCAGCATTCTTCACCAATGTGGTTGGGGAAGACTCAGCTGTTTAA 2082 0.3967 MLLTFLILPVIEKSNAESEDIAIYWGQNDDEGSLTETCATGKYSYVIIAFLNKFGNGKTPEINLASHCDPASNGCTTLSTHIRNCQLQGIKVFLSIGGADGDYGLASSDDAKNVSDYLWNNFLGGGTGSSSSRPLGDVILDGIDFDIENSTGQHWEKLAHDLKSRSTSTQVVYLSAAPQCPFPDGELGIALDTGIFDYVWIQFYNNPDCEYTQSNVNNFLNSWNQWTTSLKVGKVFLGLPASPAAASTGYVPADLLACDILPVINKSPNYGGVMLWTTYYDKQSGYSTHIKSSLCTHQNPPECRGNDCHKAKWWIWLIIGVVATLAISLIFYLGCTLRRKDKAEVDGKLNQNKSLHEFGGNTVLPDKARNIEIEGGTGNEAKMFSFDSIIAATNNFSPTNKLGEGDFGPVYKGTLKDGQEIAIRLLSTTSREGLIEFMNAAKLMAKLQHSNLIRLLGFCFQKDERILVYEYISKRSLDFYLFDENRKNELDWRKRTNIIEGIAQGLFYLHNNSRLQVIQQNLKASNILLDEEMNPKIFDFGMAQMFGLNHQEEDTNGIVGKYGCMSSDDAINGILSVKTDVLSFGVLILEILSGKKSNNHYHSAEPPNLIGYAWQLWNSGRALELIDSALNESCTPNEVLRYIHIGLLCVQGHAADIPTMLDVVSFLSNDTIELAQPKQPAFFTNVVGEDSAV. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08631 693 FunFam Acidic endochitinase SE2 19 294 - -
Seca4g08631 693 Pfam Glycosyl hydrolases family 18 21 278 IPR001223 GO:0005975
Seca4g08631 693 Gene3D Phosphorylase Kinase; domain 1 365 471 - -
Seca4g08631 693 FunFam Putative LRR receptor-like serine/threonine-protein kinase 373 471 - -
Seca4g08631 693 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 19 297 IPR001223 GO:0005975
Seca4g08631 693 Pfam Protein tyrosine and serine/threonine kinase 399 603 IPR001245 GO:0004672|GO:0006468
Seca4g08631 693 ProSiteProfiles Protein kinase domain profile. 396 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08631 693 Gene3D Transferase(Phosphotransferase) domain 1 472 680 - -
Seca4g08631 693 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 675 - -
Seca4g08631 693 SUPERFAMILY Protein kinase-like (PK-like) 380 687 IPR011009 -
Seca4g08631 693 Gene3D Glycosidases 19 294 - -
Seca4g08631 693 CDD GH18_hevamine_XipI_class_III 20 292 IPR045321 -
Seca4g08631 693 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 254 684 - -
Seca4g08631 693 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Seca4g08631 693 SUPERFAMILY (Trans)glycosidases 17 291 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08631 Seca-Chr4 205663427 205666702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08631 2 294 Glycoside Hydrolase AT5G24090 55.631 6.47e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08631 PK_Tyr_Ser-Thr 8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08631 - - adu:107464076 740.339