Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08630 ATGACCAGTTGCGGAGGAATGGGTTATGGTTGTGTCAGGGCGGAGATGGTATTATTACTAATCTGCTGCTTTCTTGTCCCAACATCAAGGGCTGAAAGCTCCGACTGCTGGGAGAGAAGGATGTGTCAAGCCTTGGTTGGTTACAGGCCGCGAGTGCCGACTACCTTAGGGGCCATCCAAACCCTCTTTAACGTGACTAACGTGGCAGACATTCTCAGTGCTAACGGCCTTCCGGAATGGACCCAGCCCAACAATTTCAAGGTGGAAGTGAATCGGTTTATCAGGATACCTTTTGAGTGCAACTGCAGTAACGATGTAAAGGATTTTGACAATTTGACGACGGGACAAGAACTGCGAATGCCACTCCCTTGTAGCTGCGGGCAGGTGAATGGGGTGGATGTGGTTCACTTTGGATTGACGCTGGAATATGGGCTTACCGTGGAACAGATAGCAGAGGAATACCATGTCCAATCACAAACCATCTGGACTTTGAACGATGCAACGAGTCCTGATCTTCTCCTTGGCCGGGCTTTAGATGTTCCTCTCCCAGTCTGTTCTTCGATGGTGAGAAACGATTCATTGGACTACCCTTTGCTTGTTCCAAATGGCTCTTATGTCTACACGGCAAATGGATGTGTGAGATGCCACTGCGATGCTGCCAAAAACTGGACATTATCATGCGTGCCATCCAATCATAAACCAAGCAAATGGTCATCTTGCCCATCTATGCAATGCGCCAATTCAAGCAATATGTACATTGGCAACATCATATATTCAAGTTCTCACAATCTTACAATCTGTGCCTACGCTGGTTACGGAAGTCAAATCATCTTCACTACCCTTGCAACAATGTCTATTATTCCTCCCGGGAATGAAGAAAGCAGGTGGTGGATATCGCTTATTGTGATAGGAGGAGTTATTATTGTACTTATATTCTGCTACTTGTGCTGTGTGATCTGGAGAAAATGCAAGATAGAAGTTACAAACAAGTTAGGAGAGGGTGGCTTTGGACCAGTTTATAAGGGGAAACTGGCAGATGGACAGGAAATAGCAATTAAGAGACTTTCTAGTAGATCAGGGCAAGGGTTGGTGGAGTTCAAAAATGAAGTTAATCTCATAGCAAAACAGCAGCATACTAATCTAGTAAGGCTTTTGGGGTTCTGCATACAAAATGAAGAAATGTTATTAATCTATGAGTATATGCCCAACAAAAGTTTAGACTTTCATATCTTTGATTCTAACAAAAGGGAAACAATATCTTGGGAACAAAGATTCAGCATCATTGAAGGCATAGCTCATGGTTTGGTTTATCTACATCATTTTTCAAGATTAAAAGTTATTCACCGAGATTTGAAAGCTAGCAACATATTGCTTGATTATGAGATGAACCCCAAAATTAGTGATTTTGGCATGGCAAGAATATTTGATTTTAAAGGAATAGAAGAGAGCACAAAAAGAATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCCATGAATGGCATAGTCTCAGTGAAGACTGATGTGTTTAGCTTTGGAGTCCTATTGCTTGAGATTGTAAGTGGGAAGAAAAACAACTCTCTCTACCACTCTGATTACTATCTCAACCTTACTGGATTAGCATGGAAACTCTGGAATGAAGATAAAGGTGTGGAGTTAATAGATCCATTAATGCCAGGATCATGCCAAACAGATGAAATACTGCGATGCATTCAGGTGGGCCTGTTATGTGTACAGGACCAGGCTGTAGATAGACCAAGCATGTTAGAAGTTGCTACAATGCTTATAAATGAAACTATCCCCCTCTTTGCTCCTAAACAGCCGGCATATTATAATGATCCAGGTGCAAATGAATTAAATGTGTTAGTAGGGAAACAAAAATGTTGTTCCATAAATGAAGTAACGATTTCAACAATGGATGCTAGATAA 1932 0.4182 MTSCGGMGYGCVRAEMVLLLICCFLVPTSRAESSDCWERRMCQALVGYRPRVPTTLGAIQTLFNVTNVADILSANGLPEWTQPNNFKVEVNRFIRIPFECNCSNDVKDFDNLTTGQELRMPLPCSCGQVNGVDVVHFGLTLEYGLTVEQIAEEYHVQSQTIWTLNDATSPDLLLGRALDVPLPVCSSMVRNDSLDYPLLVPNGSYVYTANGCVRCHCDAAKNWTLSCVPSNHKPSKWSSCPSMQCANSSNMYIGNIIYSSSHNLTICAYAGYGSQIIFTTLATMSIIPPGNEESRWWISLIVIGGVIIVLIFCYLCCVIWRKCKIEVTNKLGEGGFGPVYKGKLADGQEIAIKRLSSRSGQGLVEFKNEVNLIAKQQHTNLVRLLGFCIQNEEMLLIYEYMPNKSLDFHIFDSNKRETISWEQRFSIIEGIAHGLVYLHHFSRLKVIHRDLKASNILLDYEMNPKISDFGMARIFDFKGIEESTKRIVGTYGYMSPEYAMNGIVSVKTDVFSFGVLLLEIVSGKKNNSLYHSDYYLNLTGLAWKLWNEDKGVELIDPLMPGSCQTDEILRCIQVGLLCVQDQAVDRPSMLEVATMLINETIPLFAPKQPAYYNDPGANELNVLVGKQKCCSINEVTISTMDAR. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08630 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 242 642 - -
Seca4g08630 643 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08630 643 SUPERFAMILY Protein kinase-like (PK-like) 316 596 IPR011009 -
Seca4g08630 643 Gene3D Transferase(Phosphotransferase) domain 1 402 601 - -
Seca4g08630 643 Gene3D Phosphorylase Kinase; domain 1 331 401 - -
Seca4g08630 643 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase CES101 isoform A 401 601 - -
Seca4g08630 643 FunFam Uncharacterized protein 336 400 - -
Seca4g08630 643 CDD STKc_IRAK 331 596 - -
Seca4g08630 643 SMART serkin_6 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08630 643 Pfam LysM domain 146 181 IPR018392 -
Seca4g08630 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Seca4g08630 643 Pfam Protein tyrosine and serine/threonine kinase 326 526 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08630 Seca-Chr4 205651758 205658444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08630 329 643 Receptor kinase-like Gene Family AT4G23150 52.812 7.46e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g08630 PK_Tyr_Ser-Thr 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08630 - - gmx:100811504 841.262