Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08621 ATGGAGTGTATTTTTGCTTTCTTAAAATGGCTATGTAGAATTTATAGTTCCTTTTTACTGGTAGAAAATTTAATTGGAAGAGGTGGCTATGCTGAGGTTTACAAGGGTCGCCTCAGAAATGGGCAACTAGTGGCAGTTAAACGACTGAATAAAGGGACTCCAGATGAGAGGACATCAAGATTTCTATCTGAGTTAGGCATTATTGCTCATGTTAACCATCCTAACACTGCCAAGTTTATTGGATGTGGTGTGGAAGGAGAAACACTTGTCTTTCAACTATCTCCACTGGGAAGTTTAGAATCTCTTCTTCATGGTTCAAATAAAAGCAAATTGGATTGGAATAAAAGGTATAAAATTGCTATAGGGATCGCTGATGGTCTCCTCTATCTTCATGAGCTTTGTGAAAGGCGAATCATTCATAGAGATATTAAAGCAGAGAATATTCTGCTCACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGTACACACCATAATGTAGCAAAATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTGATGCATGGCATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGTGTTCTACTTTTGGAGATTATAACTGGGCGTCGAGCTTTGGATAATTTGCATCAAAGTGTTGTGTTATGGGCAAAGCCTTTGCTTGATGCTAATAATATTGAGGACCTTGTTGATCCTTCTCTTGGTGACAATTATGACCGACAACAGATGGATCATATTGTTTTGACTGCATCTTTGTGTGTCGAGAAGTCTCCTATCTTACGCCCTTGCATGAGTCAGGTTGCAGTACTGCTAAGAGGTGATGACTTTGTCCTAGAATCTACGAAAGAATGCCCGAGGCAATCTCTCATAAGAACACACTCAGAGGAGGTACAAGATGTGCAAGAAAACAACTCAACAAACCTTCTAAGTGATCTCAGTTGA 981 0.3904 MECIFAFLKWLCRIYSSFLLVENLIGRGGYAEVYKGRLRNGQLVAVKRLNKGTPDERTSRFLSELGIIAHVNHPNTAKFIGCGVEGETLVFQLSPLGSLESLLHGSNKSKLDWNKRYKIAIGIADGLLYLHELCERRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQCTHHNVAKFEGTFGYFAPEYLMHGIVDEKTDVYSFGVLLLEIITGRRALDNLHQSVVLWAKPLLDANNIEDLVDPSLGDNYDRQQMDHIVLTASLCVEKSPILRPCMSQVAVLLRGDDFVLESTKECPRQSLIRTHSEEVQDVQENNSTNLLSDLS. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08621 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca4g08621 326 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Seca4g08621 326 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 95 298 - -
Seca4g08621 326 Gene3D Transferase(Phosphotransferase) domain 1 95 297 - -
Seca4g08621 326 SMART serkin_6 19 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08621 326 PANTHER OS08G0249100 PROTEIN 21 317 IPR046958 -
Seca4g08621 326 Pfam Protein tyrosine and serine/threonine kinase 22 228 IPR001245 GO:0004672|GO:0006468
Seca4g08621 326 SUPERFAMILY Protein kinase-like (PK-like) 14 296 IPR011009 -
Seca4g08621 326 Gene3D Phosphorylase Kinase; domain 1 11 92 - -
Seca4g08621 326 ProSiteProfiles Protein kinase domain profile. 19 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08621 Seca-Chr4 205433628 205437089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08621 23 290 Receptor kinase-like Gene Family AT1G53420 43.321 5.11e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca4g08621 PK_Tyr_Ser-Thr 7.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08621 - - cave:132171383 478.018