Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08617 ATGCCCAAGAAGATTCAAAAAACCCTTCAAGATTACCTCTTCAAGATCAAAAAACCTCACCCCCCTCAAATCCAATTACCCTTTAACTCAAAAAGCTGGATTCTTTCTGGCTGCAAGCATCCAAAGACACCATCTTTTGCCTTAGACGACAGAAATAATCACAAGGACGATGCAGCCACTTTAGCAGACGTTGATCGTTTCCTCTTCGAGAATTTCAGGTCCCTATACCTCAAAGACGATGAAGAACCAGAAAATTACAAAAGGGTCTCTGAAGAAAGCCACCACGATGAAGAAATTCCACCACCTGGTCTATGTGGCTCCACTCGATTCTTCGTGAAGCCAGGCATGTCAGGGTCTCTGTTAGAGGATGCTCTGACAATTACAAGTGATGAAGCAGGGTCGAGTTCAACATCAATCACAACACTCAATGATTCATGCTCTCTAAAGGAGGACATGAATAATAATAATAATAATCACATTCATACTCTTCCTAATAATTGTGTTGCGCTATTGACTTACTCGATGAGTCCCTATGAGGAATTTCGGCGTTCAATGCAGGAAATGGTGGAAGCAAGGACCAAAAACGGTGAAGGGGTGATTGATTGGGATTTCATGGAGGAGCTATTGTTCTGTTACTTGAACCTCAATGAGAAGAAGTCCCGTAAGTACATTCTCAGTGCTTTTGTGGATCTAATCACTGTTATGCGTCGGAATTCAGAGACAGATTCGGTAAAGCCACGAAGTGTTCGAACTATTAGGATTGGTGGGGAGGTGAGGAAGAAGAACAATGAGGTAACGTTAGAATTTGTGTCTTCCTAG 819 0.4237 MPKKIQKTLQDYLFKIKKPHPPQIQLPFNSKSWILSGCKHPKTPSFALDDRNNHKDDAATLADVDRFLFENFRSLYLKDDEEPENYKRVSEESHHDEEIPPPGLCGSTRFFVKPGMSGSLLEDALTITSDEAGSSSTSITTLNDSCSLKEDMNNNNNNHIHTLPNNCVALLTYSMSPYEEFRRSMQEMVEARTKNGEGVIDWDFMEELLFCYLNLNEKKSRKYILSAFVDLITVMRRNSETDSVKPRSVRTIRIGGEVRKKNNEVTLEFVSS. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08617 272 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 95 235 IPR038933 GO:0045892
Seca4g08617 272 NCBIfam uncharacterized plant-specific domain TIGR01568 168 234 IPR006458 -
Seca4g08617 272 Pfam Transcriptional repressor, ovate 174 233 IPR006458 -
Seca4g08617 272 ProSiteProfiles OVATE domain profile. 170 234 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08617 Seca-Chr4 205388953 205389771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca4g08617 Ovate 4.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08617 - - lja:Lj3g3v0160750.1 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08617 4 205388953 205389771 Seca4g08617 4 205388953 205389771 ECH
Seca4g11934 4 259883214 259884098 Seca4g08617 4 205388953 205389771 PCT