Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08611 ATGGATGACAGTAGTGAGGATGATGCAAGGTATCCCCCTAATAACACATATGGTATTAGTTACCGTCAAGGATATGGTCATGTGAATCATCACAGACTTCCTGTGAGGAATTCTTCATATTCTCATCCAATTGCAAGTGAATCCGCCCAAGATAATAATGATGAGGAGGAGGAAGAAGAGGAAGAGCAGTTAGAAGGGGATGATGATGATGATGTTGATCAAAATAACAGCATTCAACTTTCCCAAAAGGATGCTGATAACAATGATGATGAAGAAGATGTGAAGGATGAGGATGGTGATGAAAATGATGGTAACAATGATGAGGATAATGATGACAATGATAAACAGAGAAGTTACACCATGACCATGAAGACTGAAGATGATTTAGAGTGGCACCCGAAAAGGCAAAAGGTGAAGAGTTTGATTTCAACCTATGCATTTGCACCTCGGGTGGCAGCACCATCAGCTGCAACTCCCTCAGCTCCTAAACCATCTTTTGTGGGTAGGAATTCCCTTACTGACTGGACTGAGCATGAGACATTTATTCTTCTTGATGCATGGGGTGAGCGGTTTCTTCAACATGGAAGGAAGAGTCTTAGATCTGAGGAGTGGCAAGAAGTTGCAGAGAAGGTCTCAAAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGCAGAAATCGTCTAGATACATTGAAGAAAAAATACAAGAAGGAGAAGATTAAATCTCCGGAAATGTGTGGTGAAAATAGCAAATGGGTTTATTATAAAAGGATGGATAAGCTAATGTCTTCTCCACCACAACAAGGGGGTCTCTCTTGTGGTTTAGACTCAGGAGAGTATGTTTTTCTGAATCCTAGAGTTTATTTGAACTGTGCAGATGGGTTGGATGAAAAGAAGGATAGTCCTGAGAATACAGAATCTATTGGTGAAGAAGATTCAGATGGACCTCAAGCAAAGAAAAGAAGGAAAGGAAGGGGCAATGGTGGTGGTTCTTCCTTCAGATTACTTGCTGATTCCATTAAGAAATTCAGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGGTGGAACTGGAAAAGATGAGGATGGATTTCCTTAAGGACTTGGAAATGCAGAAGAGGCAGATTGTAGAAAGATTGCAGGGTGAGATTTCGAAACTAGAGCAGAGAGATGATAATGATGATTCTGCTGAGAATGGTATGTGA 1215 0.4016 MDDSSEDDARYPPNNTYGISYRQGYGHVNHHRLPVRNSSYSHPIASESAQDNNDEEEEEEEEQLEGDDDDDVDQNNSIQLSQKDADNNDDEEDVKDEDGDENDGNNDEDNDDNDKQRSYTMTMKTEDDLEWHPKRQKVKSLISTYAFAPRVAAPSAATPSAPKPSFVGRNSLTDWTEHETFILLDAWGERFLQHGRKSLRSEEWQEVAEKVSKVSKIERTDTQCRNRLDTLKKKYKKEKIKSPEMCGENSKWVYYKRMDKLMSSPPQQGGLSCGLDSGEYVFLNPRVYLNCADGLDEKKDSPENTESIGEEDSDGPQAKKRRKGRGNGGGSSFRLLADSIKKFSKIYEKIENSKRQQMVELEKMRMDFLKDLEMQKRQIVERLQGEISKLEQRDDNDDSAENGM. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08611 404 MobiDBLite consensus disorder prediction 110 134 - -
Seca4g08611 404 Pfam Myb/SANT-like DNA-binding domain 174 261 IPR044822 -
Seca4g08611 404 MobiDBLite consensus disorder prediction 50 74 - -
Seca4g08611 404 Coils Coil 347 367 - -
Seca4g08611 404 ProSiteProfiles Myb-like domain profile. 175 232 IPR001005 -
Seca4g08611 404 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 165 395 IPR044823 -
Seca4g08611 404 Coils Coil 45 65 - -
Seca4g08611 404 FunFam trihelix transcription factor ASIL2 175 237 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 294 333 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 34 48 - -
Seca4g08611 404 Gene3D - 175 237 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 294 321 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 86 109 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 385 404 - -
Seca4g08611 404 Coils Coil 373 393 - -
Seca4g08611 404 MobiDBLite consensus disorder prediction 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08611 Seca-Chr4 205183818 205185032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08611 326 393 Trihelix Transcription Factor Family AT3G14180 48.529 7.44e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g08611 Myb_DNA-bind_4 8.7e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08611 - - gmx:100814194 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08611 4 205183818 205185032 Seca4g08611 4 205183818 205185032 ECH