Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08606 ATGGGTGTGAACTCCAATAGAGTGGAGCATTTTGATAGCCATGAAAACCCCATGAAATTCCAAACCGAGATACCAATGCCACCATTAGAAATTCACCAAGTTCGCTTACCACCACACCGAACCACTCTCCGCAAACTCACACAAAGGCTCTCTGAAATCTTCTTCCCTGATGATCCACTCTCCCGTTTCAAGAACCAACCTCCCTTCACCAAGTTCCTTCTAGGACTTCAATACTTTTTCCCCATTTTCCAGTGGGGTCCTCACTATAACCTCTCCCTTCTCCGTTCTGATTTCATCTCTGGCCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATTAGTTATGCCAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCAAGTTTTGTGCCCCCATTGATATACTCCTTGCTTGGGAGTTCTAGACATCTTGGTGTTGGACCTGTTTCAATTGCGTCTTTGGTTATGGGATCAATGTTAAGTGAGACTGTTTCTTACACTCAAGACCCAATTCTCTATCTGCAATTGGCTTTCACTGCCACTTTTGTTGCTGGTTTGTTCCAAGCATCTCTGGGTATATTAAGGTTAGGCTTTGTAATTGATTTCCTGTCGAAGGCAACTTTGGTGGGTTTCATGGCGGGTGCTGCGATTATTGTGTCACTGCAGCAGCTGAAAGGGTTACTTGGGATAGTGCACTTTACTAACAAGATGCAAATAATTCCTGTACTGGACTCTGTTTACAAGCAAAGACACGAGTGGTCATGGCAAACCATTCTTCTGGGATTTTGCTTCCTGGTCTTCCTGCTGACAACAAGGCACATTAGCTTGAAGAAACCAAAACTTTTCTGGGTTTCAGCAGCTGCCCCTTTGACATCAGTTATTCTGTCAACCCTTTTAGTCTTTCTTCTCAAAAATAAGGCTCATAACATTGCAATTATTGGGTACTTACCAAAGGGCCTTAATCCACCATCATTAAACATGTTATACTTCAGTGGTTCTTACTTGGCTCTTGCTATCAAAACTGGCATTGTCACAGGGATCTTATCTCTCACTGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAGAATTACCAGGTGGATGGAAACAAGGAAATGATGGCAATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACAACAGGATCATTTTCTCGATCAGCTGTTAACTATAATGCTGGAGCACAAACAACAGTTTCAAATATAATCATGGCTGCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTTTGTTCTACTATACACCAAATGTTGTCTTAGCAGCCATTATCATTACTGCTGTGATTGGACTAATAGATTATCAAGCTGCATATAAATTATGGAAGGTTGACAAACTTGATTTCTTGGCTTGTTTGTGCTCCTTTTTTGGGGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGTATAGCGGTTTCCATATCAGTCTTCAAGATCCTGCTCCATGTATCTCGACCAAACACTTCAGTTTTGGGGAATATACCAGGAACACAAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTTGCTAATTCAACTTACCTTCAAGAAAGGATATTGAGATGGGTTCGAGAAGAGGAAGAGTGTACAAAAGGAAATAATGGAAGTTTATTGAAGTGTGTAATTTTAGACATGACAGCTGTGACAGCCATAGACACAAGTGGACTTGAAACTTTAGGTGAACTTAGAAAAATGCTGGAGAATAGATCACTTCAGCTTGTGTTGGTAAACCCTGTTGGAAATGTGATGGAAAAGTTAGATACGTCAAAAATTTTGGATTCCTTTGGATCAAAAGGAGTGTATCTCACAGTGGGAGAAGCTGTGGCTGACATTTCATCATCCGAGAAAGTTCAACCTTGA 1971 0.4115 MGVNSNRVEHFDSHENPMKFQTEIPMPPLEIHQVRLPPHRTTLRKLTQRLSEIFFPDDPLSRFKNQPPFTKFLLGLQYFFPIFQWGPHYNLSLLRSDFISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLSETVSYTQDPILYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLDSVYKQRHEWSWQTILLGFCFLVFLLTTRHISLKKPKLFWVSAAAPLTSVILSTLLVFLLKNKAHNIAIIGYLPKGLNPPSLNMLYFSGSYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTTVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVSISVFKILLHVSRPNTSVLGNIPGTQIFHNINQYKEASRVPSFLILAVESPIYFANSTYLQERILRWVREEEECTKGNNGSLLKCVILDMTAVTAIDTSGLETLGELRKMLENRSLQLVLVNPVGNVMEKLDTSKILDSFGSKGVYLTVGEAVADISSSEKVQP. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08606 656 ProSiteProfiles STAS domain profile. 525 648 IPR002645 -
Seca4g08606 656 SUPERFAMILY SpoIIaa-like 530 647 IPR036513 -
Seca4g08606 656 Pfam STAS domain 526 644 IPR002645 -
Seca4g08606 656 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Seca4g08606 656 Gene3D STAS domain 505 651 IPR036513 -
Seca4g08606 656 Pfam Sulfate permease family 94 473 IPR011547 GO:0016020
Seca4g08606 656 FunFam Sulfate transporter 31 505 651 - -
Seca4g08606 656 PANTHER SULFATE TRANSPORTER 43 648 IPR001902 GO:0016020|GO:0055085
Seca4g08606 656 CDD STAS_SulP_like_sulfate_transporter 526 641 - -
Seca4g08606 656 NCBIfam sulfate permease 81 644 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08606 Seca-Chr4 205086330 205090909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08606 1 656 Inorganic Solute Cotransporters AT3G15990 75.076 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08606 K17471 - gmx:100812617 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08606 4 205086330 205090909 Seca4g08606 4 205086330 205090909 ECH
Seca4g11936 4 259914418 259918766 Seca4g08606 4 205086330 205090909 PCT