Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08582 ATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCACCACAATTATATAGGTTGTGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATACTCTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGTAGAATCTATTAATGCTCTTCCAATCTATAAGTTCAAATTGAAGAACAGTGAAAATAGTGATGATCAGGATATCAATGCAGCTATAGATGAAGGTGGGATTTTGGCTGCAGGGACAGAAAATGAACGGGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCTTGCTCTCATGTCTTTCACGTAGGGTGTGTTGATAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGCACGAGTAATGGAGAGTCACCTTCACCCTGGGACTCCAATGCGCATTAG 579 0.4041 MALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIYKFKLKNSENSDDQDINAAIDEGGILAAGTENERVISGEDAVCCICLAKYADDDELRELPCSHVFHVGCVDKWLKINASCPLCKSEVGTSNGESPSPWDSNAH. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08582 192 SMART ring_2 132 172 IPR001841 -
Seca4g08582 192 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 176 - -
Seca4g08582 192 SUPERFAMILY RING/U-box 123 180 - -
Seca4g08582 192 SMART ringv_2 131 173 IPR011016 GO:0008270
Seca4g08582 192 FunFam E3 ubiquitin-protein ligase 115 182 - -
Seca4g08582 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 181 IPR013083 -
Seca4g08582 192 Pfam Ring finger domain 132 173 IPR001841 -
Seca4g08582 192 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08582 Seca-Chr4 204541837 204543122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08582 1 183 C3H Transcription Factor Family AT1G80400 72.678 4.32e-99 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08582 - - gmx:100819729 379.793