Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08580 ATGGAGAAAGAAGGTCTTGGACTTGAAATCACGGAACTGAGGTTGGGGCTTCCCGGTGGGGAAGTGGAAATAAAGAATAATAATGAGAAGCAAAAGAAGAGGGTGTTCTCGGAGATTGAGAATGATATTGATGAAAATAGCTCCTCGGAGGAGGATAAGAAAATAATGCAAACGAAGAATCAAGTTGTAGGGTGGCCTCCAGTGTGTTCCTACCGGAAGAAGAATAGCATGAATGAAGCCTCCAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATTTGGGTATGCATAAGGGATACTCTGAGTTAGCCTTTGCCTTGGAGAAGCTCTTTGGTTGCTATGGAATCGGGGAGTCGTTAAAGGATGGAGACAATTCAGAACACGTTCCCATCTACGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCCTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTTGATTTGCAACCAAAAGGATCGTTAAAGGGATTTATAGAAGACGTGACAAAATGA 576 0.4358 MEKEGLGLEITELRLGLPGGEVEIKNNNEKQKKRVFSEIENDIDENSSSEEDKKIMQTKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKIDLGMHKGYSELAFALEKLFGCYGIGESLKDGDNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEDVTK. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08580 191 Gene3D - 76 179 - -
Seca4g08580 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
Seca4g08580 191 Pfam AUX/IAA family 32 174 IPR033389 -
Seca4g08580 191 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
Seca4g08580 191 SUPERFAMILY CAD & PB1 domains 75 167 - -
Seca4g08580 191 FunFam Auxin-responsive protein 77 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08580 Seca-Chr4 204504747 204509458 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08580 74 189 B3 DNA Binding Superfamily AT4G23980 33.621 1.31e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca4g08580 AUX_IAA 8.8e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08580 K14484 - gmx:100811879 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08580 4 204504747 204509458 Seca4g08580 4 204504747 204509458 ECH
Seca4g08580 4 204504747 204509458 Seca4g08580 4 204504747 204509458 PCT