Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08575 ATGTACACACCACCACAAAGTGGCATCATCCACTCTTCGGTATCTGACGCCGTGGACGACGGTAACTTGAAGGAGATCACAGAGCTCACCCTTGGCCTTCCCGGTACCAAAACTGCTGCAGCAGGCACAAAACGTGGCTTCACTGTCACCGTTGATCTCCATCTTGCCACAAATAACTGCTTGCGCTCCACCGCCAAATTCCCACCACCCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCGATGAAGAGTTGCAAGTATGTGAAGGTGGCGGTGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTATGAAAGTTATGAGCATCTCCTGAGGGCATTAGAGACCATGTTTTGTTGCTTAACCATTCGTAATGATTCGATGAATGAAATGAAACTGATGGACAATGGGAATGGGGTTGAATACATGCCCACCTACGAGGACAGAGATGGTGACTGGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCGTGCAAGAGGATAAGGCTTATGATCAGCTCAGAGGCCATTGACTTAGGTTAG 576 0.4913 MYTPPQSGIIHSSVSDAVDDGNLKEITELTLGLPGTKTAAAGTKRGFTVTVDLHLATNNCLRSTAKFPPPKAQVVGWPPVRASRKNAMKSCKYVKVAVDGAPYLRKVDLEMYESYEHLLRALETMFCCLTIRNDSMNEMKLMDNGNGVEYMPTYEDRDGDWMLVGDVPWKMFVESCKRIRLMISSEAIDLG. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08575 191 SUPERFAMILY CAD & PB1 domains 83 183 - -
Seca4g08575 191 ProSiteProfiles PB1 domain profile. 91 186 IPR000270 GO:0005515
Seca4g08575 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 188 IPR003311 GO:0005634|GO:0006355
Seca4g08575 191 FunFam Auxin-responsive protein 86 191 - -
Seca4g08575 191 Pfam AUX/IAA family 89 190 IPR033389 -
Seca4g08575 191 Gene3D - 85 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08575 Seca-Chr4 204313568 204315634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08575 84 186 B3 DNA Binding Superfamily AT2G46530 30.097 9.62e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca4g08575 AUX_IAA 7.8e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08575 K14484 - gmx:100815098 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08575 4 204313568 204315634 Seca4g08575 4 204313568 204315634 ECH