Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08571 ATGAAATTTTCAGTGTTATTTAGAGACCCTCATGCAATTCTCTCTATACGTTCTTGGTTTCTTAGGCGGTTTCTTCGAGCAGCACAGGCTTCTTACAAGAGTCCCAGCTTTGAATTGGAGTACTTGGCCAATTACCTGGCTGAACTAACACTGATGAACTATGGTTTCTTAAACTTCCCTCCTTCTAAGATTGCTGCATCTGCTGTATTTCTCGCCAGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTCAACATTATGCCTCTTACAAAGCATCAGATTTGAAAACAATAGTTATTGCATTACAGGATCTACAGCTCAATAGTGATGGCTGCCCTTTAACTGCAATTCGCACAAAGTACAGACAAGACAAGTTCAAATGTGTAGCAGCTTTGTCTTCTCCAAAACTGCTTGAAACTCTGTTCTGA 438 0.4087 MKFSVLFRDPHAILSIRSWFLRRFLRAAQASYKSPSFELEYLANYLAELTLMNYGFLNFPPSKIAASAVFLARWTLDQSSHPWNPTLQHYASYKASDLKTIVIALQDLQLNSDGCPLTAIRTKYRQDKFKCVAALSSPKLLETLF. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08571 145 Gene3D - 16 143 - -
Seca4g08571 145 Pfam Cyclin, C-terminal domain 19 137 IPR004367 -
Seca4g08571 145 SUPERFAMILY Cyclin-like 19 140 IPR036915 -
Seca4g08571 145 SMART cyclin_7 19 107 IPR013763 -
Seca4g08571 145 FunFam Cyclin A1 14 134 - -
Seca4g08571 145 CDD CYCLIN_AtCycA-like_rpt2 20 129 - -
Seca4g08571 145 SMART Cyclin_C_2 15 138 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08571 Seca-Chr4 204279477 204281039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08571 20 145 Core Cell Cycle Gene Families AT1G15570 73.810 7.68e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08571 K06627 - gmx:100793657 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08571 4 204279477 204281039 Seca4g08571 4 204279477 204281039 ECH