Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08515 ATGTCTGATTCGAGTCATAACTTGTTGGCAGGCGTCGATAGTTTATGTGCTTTTGATCACAATCACAGGTCACACAGGGCAACCCAACCTGCTTGTCAAGCAATAAAGAACCTTCATACAGAACATGGAGAGCTTCAACTCCACCATTTCCACCTCTTACGCCTCCTAGGCTGCGGGGATATTGGAAAAGTTTTCCTCTGTGAGCTTAACCAATCTTTGAAGCCACAACCCAATTGCTATTACGCCATGAAAGTAGTAGATACAAAGTCCCTGAAGTTAAGAAATAGTTTGAAAAGGGCTGATATGGAGAAGGAAGTACTGAGCATGCTTGATCACCCTTTTTTGCCAACCCTTTATGCAAAGTTTGATGCTTTTCAACACTCATGTTTGGTCATGGATTATTGTCCTGGTGGGGACTTGTTTACACTTCAGCAGCAACAGCCAGAACTTCACTTTAGCATCTCCACTGTAAGATTCTATGCAGCTGAGGTGCTTCTTGCTATTGAGTATCTCCATATGATGGGGATAGTTTATAGAGACCTCAAGCCAGAAAATGTGCTTATTCAAGAAGATGGGCATATCATGCTATCTGACTTTGATCTCTCTCTTCACTTGGAAGTTCAACCCAAGCTTCTAAAACAAGGGCTTGAGTATGAGCTTTTGAACAAGAGAATTAAGAAGCCAATGTTCTGTTGCAGCGGGAATTCAGATGAGGATATGAAAAGGAGAAAGAAAAAGACAGCACATGGAGTGGACATTGAAATGTCAGCTGAACCCATGAGTGGTAGATCACACTCATTTGTTGGGACTCATGAGTATTTAGCACCAGAGATGATTTTGGGATTAGGCCATGGAAGTGCAGTGGATTGGTGGGCATTTGGGGTGTTTCTGTATGAGCTGTTATTTGGATTTACACCTTTTAAAGATGCAAGCAATGAGAAAACATTGGAGAATATCATGGGGCAGAAATTAACCTTCCCAAGAAGTACTAATTCTAGTGACAGAAAAGATTGTGAGGAGATTGCAAAGGTTCAGGACCTTATAAGGAAGCTGCTGGTGAAAAACCCCCACAAGAGAATGGGATATCAAACAGGATCTTGTGAGATTAAAAAACATGAGTTCTTTGAGGGGGTTAATTGGGCCTTAATCAGATCAGTTAAACCTCCTTTTGTTCTTAGAACTTCACAATTACATGAAAAACAGTCCTCAATTACCATGCCAAAACTAAGCGTCAAGGATATTGCTACTTTGCAAGGCCCTCATCAAATTAATTTCTTCTGA 1281 0.4106 MSDSSHNLLAGVDSLCAFDHNHRSHRATQPACQAIKNLHTEHGELQLHHFHLLRLLGCGDIGKVFLCELNQSLKPQPNCYYAMKVVDTKSLKLRNSLKRADMEKEVLSMLDHPFLPTLYAKFDAFQHSCLVMDYCPGGDLFTLQQQQPELHFSISTVRFYAAEVLLAIEYLHMMGIVYRDLKPENVLIQEDGHIMLSDFDLSLHLEVQPKLLKQGLEYELLNKRIKKPMFCCSGNSDEDMKRRKKKTAHGVDIEMSAEPMSGRSHSFVGTHEYLAPEMILGLGHGSAVDWWAFGVFLYELLFGFTPFKDASNEKTLENIMGQKLTFPRSTNSSDRKDCEEIAKVQDLIRKLLVKNPHKRMGYQTGSCEIKKHEFFEGVNWALIRSVKPPFVLRTSQLHEKQSSITMPKLSVKDIATLQGPHQINFF. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08515 426 SUPERFAMILY Protein kinase-like (PK-like) 35 404 IPR011009 -
Seca4g08515 426 Gene3D Transferase(Phosphotransferase) domain 1 249 393 - -
Seca4g08515 426 PANTHER FLIPPASE KINASE 1-RELATED 19 396 - -
Seca4g08515 426 Gene3D Transferase(Phosphotransferase) domain 1 135 204 - -
Seca4g08515 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Seca4g08515 426 SMART serkin_6 50 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08515 426 Pfam Protein kinase domain 50 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08515 426 Pfam Protein kinase domain 264 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08515 426 FunFam serine/threonine-protein kinase D6PK-like 262 393 - -
Seca4g08515 426 Gene3D Phosphorylase Kinase; domain 1 48 134 - -
Seca4g08515 426 ProSiteProfiles Protein kinase domain profile. 50 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08515 426 FunFam Serine/threonine-protein kinase OXI1 139 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08515 Seca-Chr4 202889789 202891484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08515 22 417 AGC Kinase Gene Family AT5G47750 50.476 1.91e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g08515 Pkinase 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08515 K08286 - nnu:104592366 468.388