Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08489 ATGTGCACTCTTGGGTCCAAATGCAACTATGCTCATGGCATGGGTGAGCTTAGACGCCCCTCATTTCAAGAACACAGACCCAAACTATGCAGATTGTTCCTTCGAAACAAACACTGCACCTATGGCCACACCTGTCGCTTCCTTCATTCAACTGCTGCAGAAAGTGTTGATTCTCCAAACAACTGGAATAGACTTGATCGCTACTCTTTTGCAGAATACAGGACAATGCAAAGTTCTGCTCATGCTACAATTGATGGTAACTCTTCTGCAGAATACAGGACAATGCAATCTTCTACTGCTGCTACACATACAAATGCCTTAACCAGCACAGTTGCAACTAGCTCTCTGCATAAGAATGAACTATATGTTGTGAAGGGGATATTCAAGGAAAATGAACTGCAAAGGATCAGTCGCATCTATGCTGATTGGATTTAA 435 0.4276 MCTLGSKCNYAHGMGELRRPSFQEHRPKLCRLFLRNKHCTYGHTCRFLHSTAAESVDSPNNWNRLDRYSFAEYRTMQSSAHATIDGNSSAEYRTMQSSTAATHTNALTSTVATSSLHKNELYVVKGIFKENELQRISRIYADWI. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08489 144 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 50 IPR000571 GO:0046872
Seca4g08489 144 SUPERFAMILY CCCH zinc finger 24 51 IPR036855 GO:0046872
Seca4g08489 144 ProSiteProfiles Zinc finger C3H1-type profile. 24 52 IPR000571 GO:0046872
Seca4g08489 144 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 101 IPR045877 GO:0003729
Seca4g08489 144 ProSiteProfiles Zinc finger C3H1-type profile. 1 15 IPR000571 GO:0046872
Seca4g08489 144 Gene3D - 1 19 - -
Seca4g08489 144 Gene3D - 23 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08489 Seca-Chr4 202510623 202511763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08489 2 54 C3H Transcription Factor Family AT1G68200 41.818 7.19e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g08489 zf-CCCH 1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08489 - K18753 cam:101493245 153.295