Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08482 ATGGATAAAAGTGGTGATGATCCAATTGTTAAGTTAAATGATGATAGAGATGTTGATTTTGATCATGTTGTTAGCTCTAATGATATTTGTAGTGAGCAACATAATGAAGCGGGTGATAAGAATGATCCTGGAGACGTTCATGTAACAGATGAACAGGGTACAAGGATTATGGGCTTAAGGATTAGTGGCTTGAAAGCTGATGATATACAGGGTCTTCAGTTTGGTAATGAGTTTGAAGCTTATGTATTTTACAATGAATATGCTAGAGTCCATGGCTTTGTTGTGAGGAGAGATGAAATAGGTCGAGATTCCAACGGGAATATGAATATGCGTCAATATATTTGCAATAGAGAGGGATTGAGGAAAAAAAACACTTTTTAA 381 0.357 MDKSGDDPIVKLNDDRDVDFDHVVSSNDICSEQHNEAGDKNDPGDVHVTDEQGTRIMGLRISGLKADDIQGLQFGNEFEAYVFYNEYARVHGFVVRRDEIGRDSNGNMNMRQYICNREGLRKKNTF. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08482 126 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 17 123 - -
Seca4g08482 126 Pfam FAR1 DNA-binding domain 83 124 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08482 Seca-Chr4 202323635 202324015 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08482 FAR1 8.4e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08482 - K17604 ccaj:109792835 97.0561