Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08450 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCATCCATTATTTAGGAAAAGGAGGGTGTGGCTTGGGACATTTGAAACTGCTGAAGAAGCAGCAAGAGCATATGATGAGGCAGCAATTTTGATGAGTGGAAGAAATGCCAAAACTAACTTCCCAGTTGCTGATAATCAAAAGGGCAATCACAATTCTACTTCATCCTTTTCCAATACATTTTCTGCAGTTCTCAGTGCAAAGCTCAGGAAGTGTTGTAAGTCCCCTTCACCTTCCCTCACTTGTCTAAGGCTTGATGCAGAGAATTCCCACTTTGGGGTATGGCAGAAGAGAGCAGGGCCTCATTCTGAATCAAACTGGATCATGATGGTTGAATTGGAAAGGAAAAATAATGGAACTTCTTCTGATTCAGAATTGTCACTGCCAGAGACTCCAGAGAAAGTAATAAAACCAAAGGAAAATAACAATGGTTTGGAAGAGGAGCAGAGGATTGCCTTGCAGATGATAGAAGAACTTCTAAATAGGAATTAG 558 0.4211 MVQSKKFRGVRQRHWGSWVSEIRHPLFRKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVADNQKGNHNSTSSFSNTFSAVLSAKLRKCCKSPSPSLTCLRLDAENSHFGVWQKRAGPHSESNWIMMVELERKNNGTSSDSELSLPETPEKVIKPKENNNGLEEEQRIALQMIEELLNRN. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08450 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 139 - -
Seca4g08450 185 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Seca4g08450 185 Coils Coil 164 184 - -
Seca4g08450 185 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Seca4g08450 185 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Seca4g08450 185 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Seca4g08450 185 PIRSF PTI6 136 163 IPR017392 GO:0003700
Seca4g08450 185 PIRSF PTI6 2 115 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08450 Seca-Chr4 201718999 201720160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08450 1 185 AP2-EREBP Transcription Factor Family AT1G15360 58.911 2.56e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g08450 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08450 - - gmx:100796962 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08450 4 201718999 201720160 Seca4g08450 4 201718999 201720160 ECH