Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08449 ATGGCGCAAATACTGCTACATGGAACTCTCCACGTCACAATCTATGAAGTCGATAAGCTTAAGACTGGTGGTGGCAATATTTTGACCCAGCTCGTACATAACATCGAGGAGACTGTTGGCTTTGGAAAAGGAGTTACCAAACTTTATGCAACTATTGATCTTGAGAAGGCACGAGTGGGAAGGACCAGAATTATAGAAAAGGAGCATACTAATCCTAGATGGTATGAGTCTTTTCACATTTACTGTGCCCATATGGCATCAAATATCATATTCACTGTGAAAGATGACAATCCCATTGGGGCAACTCTAATTGGAAGAGCATATGTGCCTGTTAAGGAGGTCTTGGATGGGGAGGAAATAGATAGATGGGTTGAGATATTGGATGGGCATAAAAATCCAATCCATGGACATTCAAAGATCCATGTGAAGCTGCAATATTATGATGTTACAAAAGACCGCAACTGGGATCTTGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCTTACACTTTCTTCTCACAAAGACAAGCATGTAAGGTTTCTCTGTACCAAGATGCACATGTCCCAGACAATTTTGTCCCTCAAATATCACTTGCAGGAGGCCAGAGTTACAAGCCTCATAGATGTTGGGAGGATATTTATGATGCAATCACTAATGCAAGGCACTTAATATATATTACTGGCTGGTCTGTTTATACTGAGTTTACTTTGATAAGAGATTCTAGGAGGCTAAAGCCTGGAGGAGACACAACACTTGGTGAGCTTCTCAAGAAAAAAGCAAATGAAGGTGTAAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCTGTCGGTTTGTTAAAAAAAGATGGGTTGATGGCTACTCATGATGAAGAAACCGAACGCTACTTTCGTGGCACTGAGGTGCACTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGAAGTGTTATCCAGGACATAGGAATTGCCACCATGTTTACTCATCACCAGAAAATTGTGGTGGTAGACAGTGAGTTGCCAAATGGAGGGTCAGAGAAGAGAAGAATTGTGAGTTTTGTAGGGGGCATTGATCTCTGTGATGGAAGATATGACACTCCATTCCATTCACTTTTCAGAACACTGGACACAGCACATCATGATGATTTTCATCAGCCTAACTTTCCTGGTGCTGACATTAAAAAAGGTGGTCCAAGAGAACCTTGGCATGACATCCACTCTAAGCTTGAAGGGCCAATTGCTTGGGATGTTTTGTATAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTTGTTCCACTGAGAGACCTTGAAGATGTCATTATTACCCCATCCCCAGTAACTTACCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCTAGAGCTGGTCTTATTAGTGGGAAGGATAATATAATAGATCGTAGTATTCAAGATGCTTATATTAATGCTATTAGACGTGCAAAGAATTTCATCTACATTGAAAATCAATATTTCCTTGGAAGTTGTTATGACTGGAGTCCTGATGGTATTAAGCCTGAAGATATTGGTGCTTTGCATCTAATCCCCAAAGAGCTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGAGAAAGGTTCAGTGTGTATATTGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCTATCTTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTATTCAGGCACTTAATGCAAAGGGAATTGAGGAAGATCCTCGGAACTATTTGACATTCTTTTGCCTTGGCAATCGTGAGGTAAAGAAACAAGGAGAGTATGAGCCTTCAGAAAGTCCAGAACCTGATTCAGATTATATGAGAGCCCAAGAGGCCAGACGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCGTTGGGTCTGCCAACATCAACCAGAGATCAATGGATGGTGCTAGAGACTCAGAGATTGCCATGGGAGCTTATCAGCCCTATCATTTGGCTACCAGGCAGCCAGCAAGGGGACAGATTCATGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCACCCAGAAAATGAAGAGTGTATTGTGAAGGTGAACCAGCTTGCTGACAGATACTGGGATCTCTATTCTAGTGAGTCACTTGAGCATGACCTCCCAGGCCACCTCCTCCGGTATCCTATTTGGATTTCAGGCGAAGGAAAAGTCACAGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGTGTTCTTGGCAACAAAGTTGACTACCTGCCACCCATCCTTACTACTTAG 2424 0.4266 MAQILLHGTLHVTIYEVDKLKTGGGNILTQLVHNIEETVGFGKGVTKLYATIDLEKARVGRTRIIEKEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVKEVLDGEEIDRWVEILDGHKNPIHGHSKIHVKLQYYDVTKDRNWDLGIRSPKFPGVPYTFFSQRQACKVSLYQDAHVPDNFVPQISLAGGQSYKPHRCWEDIYDAITNARHLIYITGWSVYTEFTLIRDSRRLKPGGDTTLGELLKKKANEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFRGTEVHCVLCPRNPDDGGSVIQDIGIATMFTHHQKIVVVDSELPNGGSEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGADIKKGGPREPWHDIHSKLEGPIAWDVLYNFEQRWRKQGGKDLLVPLRDLEDVIITPSPVTYPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCYDWSPDGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYIVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVIQALNAKGIEEDPRNYLTFFCLGNREVKKQGEYEPSESPEPDSDYMRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFLHPENEECIVKVNQLADRYWDLYSSESLEHDLPGHLLRYPIWISGEGKVTELPGFEFFPDTKARVLGNKVDYLPPILTT. 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08449 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Seca4g08449 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Seca4g08449 807 FunFam Phospholipase D 466 699 - -
Seca4g08449 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Seca4g08449 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Seca4g08449 807 Gene3D Endonuclease Chain A 198 439 - -
Seca4g08449 807 FunFam Phospholipase D delta 200 443 - -
Seca4g08449 807 SUPERFAMILY Phospholipase D/nuclease 446 737 - -
Seca4g08449 807 Gene3D C2 domain 6 156 IPR035892 -
Seca4g08449 807 CDD PLDc_pPLDalpha_2 491 700 - -
Seca4g08449 807 Gene3D Endonuclease Chain A 475 697 - -
Seca4g08449 807 CDD C2_plant_PLD 2 147 - -
Seca4g08449 807 SUPERFAMILY Phospholipase D/nuclease 150 440 - -
Seca4g08449 807 Pfam C2 domain 8 126 IPR000008 -
Seca4g08449 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Seca4g08449 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca4g08449 807 SMART C2_3c 9 123 IPR000008 -
Seca4g08449 807 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Seca4g08449 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Seca4g08449 807 SMART pld_4 325 363 IPR001736 GO:0003824
Seca4g08449 807 SMART pld_4 653 680 IPR001736 GO:0003824
Seca4g08449 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08449 Seca-Chr4 201684504 201689533 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08449 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.123 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08449 K01115 - gmx:100784434 1514.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08449 4 201684504 201689533 Seca4g12004 4 260858021 260861746 ECH
Seca4g08449 4 201684504 201689533 Seca4g08449 4 201684504 201689533 ECH
Seca4g12004 4 260858021 260861746 Seca4g08449 4 201684504 201689533 PCT