Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08448 ATGGCGCAAATTCTGCTACATGGGACTCTCCACGTCACAATCTATGAGGTTGATAGGCTCAAGACTGATGGTGGCAATATTTTTACCCAGATTCTCGAATTTCTTTATGGTATCAGAGCAGTCTCTGTGGAGCTCTGCCACTGCCTTTGCTGCGTCCTTAACCTTCAAACCTTTCATCAATGGAGAATTGAATCCCAGATCATCTACAAAATCCCTCTAACTGTTTCTTTCTACATCCTGGAGATGGACTCACAAGCAGATCTCTTTGGATTCTCTTATGTGCTCGACAAAATCCATTCTTTTAAACTTGAAGATCTGCTTGTACAAAACATTGAGGAGACTGTTGGTTTTGGAAAAGGAGTTACCAAACTTTATGCAACCATTGGTCTAGAGAAGGCGCGAGTGGGAAGGACCAGAATTATAGAAAAGGAACATACTAATCCTAGATGGTTTGAGTCTTTTCACATTTATTGTGCTCATATGGCATCACATATCATATTCACTGTGAAAGATGACAATCCTATTGGGGCGACCTTAATTGGAAGGGCATATGTGCCTGTCAAGGAGGTCTTGGATGGTAAGGAGATAGATAGATGGGTTGAAATATTGGATGAGCATAAAAATCCAATCCATGGACATTCAAAGATCCATGTGAAGCTGCATTATTTTGATGTTACAAAAGACCGCAACTGGGGTCTAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCTTATACTTTCTGCTCTCAAAGACAAGGATGTAAGATTTCTCTGTACCAAGATGCTCATGTCCCAGACAATTTTGTCCCTAAAATACCACTTGCTGGAGGCCAGACTTAA 840 0.4095 MAQILLHGTLHVTIYEVDRLKTDGGNIFTQILEFLYGIRAVSVELCHCLCCVLNLQTFHQWRIESQIIYKIPLTVSFYILEMDSQADLFGFSYVLDKIHSFKLEDLLVQNIEETVGFGKGVTKLYATIGLEKARVGRTRIIEKEHTNPRWFESFHIYCAHMASHIIFTVKDDNPIGATLIGRAYVPVKEVLDGKEIDRWVEILDEHKNPIHGHSKIHVKLHYFDVTKDRNWGLGIRSPKFPGVPYTFCSQRQGCKISLYQDAHVPDNFVPKIPLAGGQT. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08448 279 Gene3D C2 domain 97 231 IPR035892 -
Seca4g08448 279 Pfam C2 domain 111 202 IPR000008 -
Seca4g08448 279 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 114 225 IPR035892 -
Seca4g08448 279 ProSiteProfiles C2 domain profile. 72 200 IPR000008 -
Seca4g08448 279 PANTHER PHOSPHOLIPASE D 4 267 IPR015679 -
Seca4g08448 279 CDD C2_plant_PLD 2 223 - -
Seca4g08448 279 SMART C2_3c 95 199 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08448 Seca-Chr4 201662149 201664858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08448 107 279 Phospholipase D Gene Family (Wang group) AT3G15730 73.410 5.07e-91 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08448 K01115 - gmx:100784434 327.405