Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08447 ATGAGGCCAAAGCCTGGAGGAGACACAACACTTGGTGAGCTTCTCAAGAAGAAAGCAAAGGATGGTGTCAGGGTTTTAATGCTTGTTTGGGATGATAGAACATCAATTCCATTGATAAAAAAACATGGTTATATGGGTACTCATGATGAAGAAACCGAGGGGTACTTCTACGGCACTGAAGTGCACTGTGTTTTATGCCCTCGGAATCCTGATGATGGTGGAAGTGTTATCCAGGACATAGAAATTGCCACCATGTTTACTCATCACCAGAAAATTGTGGTAGTGGACAGTGAGTTGCCAAGTGGAGGTACAGATAAGAGAAGAATTGTGAGTTTTGTAGGGGGCATTGATCTCTGTGATGGAAGATATGATACTCCATTTCATTCACTTTTCAGAACACTGGACACGGCACATCATGATGATTTTCATCAGATTAACTTTCCTGGTGCTTCAATTAAAAAAGGTGGTCCCAGGGAACCTTGGCATGACATCCACTCTCCGCTTGAAGGGCCCGTTGCTTGGGATGTTTTGTATAACTTTGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTTGTTCCACTGAGAGACCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACTTTCCCTCATGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGAGCAGCTTATGGGTTCCCAGAGACTCCTGAAGATGCTGCTAAAGCTGGGCTTGTTAGTGGGAAGGATAATATAATAGATCGCAGTATTCAAGATGCTTACATTAATGCTATTCGACGTGCAAAGAATTTCATCTACATTGAAAATCAGTATTTCCTTGGAAGCTGTTATGACTGGAGTCCTGATGGTATTAAGCCTGAAGATATTGGTGCTTTGCATCTAATCCCCAAAGAGCTTTCACTTAAGATTGTTAGCAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATATTGTGGTTCCAATGTGGCCAGAGGGTGAGCCAGAAGGTGGATCTGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTGTTCAGGCACTCAATGCCAAGGGAATTGATGACGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGCAACCGTGAGGTGAAGAAACAAGGAGAGTATGAGCCTTCAGAAAGACCAGAACCTGATTCAGATTATATGAGAGCCCAAGAGGCCAGACGCTTCATGATTTATGTCCATGCAAAGATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCAAACATCAACCAGAGATCAATGGATGGTGCCAGAGACTCTGAGATTGCCATGGGTGCTTATCAGCCCTATCATTTGGCTACCAGGCAGCCTGCAAGGGGTCAGATCCATGGTTTCCGAATGTCATTGTGGTATGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCACCCAGAAAGTGAAGAGTGCATTAGGAAGGTGAACCAGATTGCTGACAAGTATTGGAATCTCTATTCTAGTGAGTCACTTGAGCATGACCTTCCAGGCCACCTGCTCCGCTATCCTGTTGGGATTTCTAGCGAAGGAAAAGTCACAGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTAGTGTTCTTGGCCACAAAGATGACTACCTACCACCCATTCTTACTACTTAG 1701 0.4415 MRPKPGGDTTLGELLKKKAKDGVRVLMLVWDDRTSIPLIKKHGYMGTHDEETEGYFYGTEVHCVLCPRNPDDGGSVIQDIEIATMFTHHQKIVVVDSELPSGGTDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQINFPGASIKKGGPREPWHDIHSPLEGPVAWDVLYNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPVTFPHDHETWNVQLFRSIDGGAAYGFPETPEDAAKAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCYDWSPDGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYIVVPMWPEGEPEGGSVQAILDWQRRTMDMMYKDVVQALNAKGIDDDPRNYLTFFCLGNREVKKQGEYEPSERPEPDSDYMRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHDSFLHPESEECIRKVNQIADKYWNLYSSESLEHDLPGHLLRYPVGISSEGKVTELPGFEFFPDTKASVLGHKDDYLPPILTT. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08447 566 CDD PLDc_pPLDalpha_2 250 459 - -
Seca4g08447 566 SUPERFAMILY Phospholipase D/nuclease 10 203 - -
Seca4g08447 566 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 84 122 IPR001736 GO:0003824
Seca4g08447 566 Gene3D Endonuclease Chain A 5 196 - -
Seca4g08447 566 Pfam Phospholipase D C terminal 485 555 IPR024632 -
Seca4g08447 566 SMART pld_4 412 439 IPR001736 GO:0003824
Seca4g08447 566 SMART pld_4 84 122 IPR001736 GO:0003824
Seca4g08447 566 SUPERFAMILY Phospholipase D/nuclease 211 496 - -
Seca4g08447 566 Gene3D Endonuclease Chain A 232 457 - -
Seca4g08447 566 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 412 439 IPR001736 GO:0003824
Seca4g08447 566 Pfam Phospholipase D Active site motif 413 439 IPR001736 GO:0003824
Seca4g08447 566 Pfam Phospholipase D Active site motif 84 122 IPR001736 GO:0003824
Seca4g08447 566 PANTHER PHOSPHOLIPASE D 2 554 IPR015679 -
Seca4g08447 566 FunFam Phospholipase D 225 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08447 Seca-Chr4 201659745 201662037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08447 2 566 Phospholipase D Gene Family (Wang group) AT3G15730 81.449 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08447 K01115 - gmx:100784434 1059.28