Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08438 ATGGGCTTGTTCAGATGTGGAACCTTGCTTTTCTATGTGCTACTTCTGTTTAGAACCTGCCAAGCCAAGGATCAACACATTAGCCAGATATATCCTGGTTTCAGTGCATCTAGGCTAGATTGGAATGACCATGGTGGGTTCTTCTTGCTATCTAACAGCTCAGCTTTTGCTTTTGGATTCTTCACTGCCTTGGATGTTTCATTGTTTGTTTTAGTGGTCATTCACTTGAGTAGCTATAAAGTGGTTTGGACTGCCAATAGAGGCTTGCTTGTTAGAAATTCTAATAGATTTGTGTTTGACCATAATGGGAATGCATATTTGGAAGGTGGGAATGGTATGGTTTGGGCAACTAATACAACAGGACAAAAAGTGAGATCCATGGAATTGCTTGATTCAGGGAATTTGGTGTTACTTGGGGAAAATGGGACAGCTATTTGGGAGAGTTTTAGCCATCCCACTGATACTCTTTTGCCTGGTCAAGCTTTTGTGGAAGGAATGACAATGAAAAGCTTCCGCAACAGCATGAACTTGTTTCATTATCTTGGTTATATAGCAGGTGACTTGGTTCTCTATGTTGGATTTGTACCTACACAACCTTACTGGTTCCTATCAGACAATGTCACTGGTAAGGTTCACTCTGCTTCTCTAGTGTCCAATTCATGGAATTTTTATGACAAAAATGGAGCTTTGCTATGGAAAATTGTGTTCTCTGACCATTCAGATCCTAAGTCAATGTGGGCTGCTATTTTGGATCCAAATGGTGTTATCTCTTTCTATGATCTTAACAAGGGAAGATCTGCTAACCCTGAAGCAATGAAAATTCCACAAGACCCTTGTGGCATTCCTGAGCCTTGTGATCCTTACTATGTTTGTTTCTTTGAAAATTGGTGTGAATGCCCTGCACTTCTCAAATCTCGTTTTAATTGCAAGCCTCCAAACATCTCAACTTGTTCTAGAAGCTCAAAAACAGAACTTTTATATGTTGGTGAAGAGCTTGATTATTTTGCACTTAAGTATGTTGCACCAGTTTCAAAATCAACCTTGAGTGCTTGCAAAGATTCTTGTTTAGGAAACTGCTCTTGCCTTGTGCTTTTCCATGAAAACAGTACTGGTAGATGCTTTCATTTTGATCAGACTGGGAGTTTCCAACGCTTTAAGGGTAACACAAGTGGTTATGTTTCATACATGAAGGTCTCCATTGATGAAGGAAATGGTAACAAAATTGGAAGGAAGAACTTGCTTCTAATTATCTTCATGGTAATTCTTACAGTTCTGGTTATAGTTGGTCTTATAACAGGATATAGGTACTACATGAAGAAGGATAAGAATTTTGAAGGGTACCCTCAAGACACCTTGGAGGAAGATGATTTCTTTGATAGTCTCTCTGGGATGCCTGCACGTTTTACTTATAGTGCTCTTGCAAGAGCAACTAAGGACTTCTCCACAAAAATTGGTGAAGGTGGTTTTGGCTCAGTGTATCTAGGTGTACTTGAAGATGGCACACAATTGGCTGTGAAAAAATTGGAAGGGGTTGGACAAGGGGCAAAAGAGTTCAAAGCTGAAGTGTCCATAATTGGAAGTATTCACCATGTTCATTTGGTAAAGCTGAAAGGGTTTTGTGCTGAAGGTCCTCATCGCCTTCTTGTTTATGAATACATGGCAAGGGGTTCTTTGGATAAATGGATCTTCAAGAACAGTGAAAACAATTTCTTGTTGAATTGGGACACGAGGTACAACATTGCAATAGGCACTGCAAAAGGGTTGGCCTATCTTCATGAGGAGTGTGAAGTGAGGATTATTCACTGTGATATTAAACCACAAAATGTTCTTCTTGATGATAATTTCATGGCTAAAGTTTCTGATTTTGGATTGGCTAAGCTAATGAGCAGAGAACAAAGCCATGTTTTTACAACTCTAAGAGGCACAAGAGGATATCTAGCTCCAGAATGGATTACTAACTATGCAATTTCAGAGAAGAGTGATATATACAGCTATGGCATGGTTTTGCTTGAGATTATTGGAGGAAGGAAGAACTATGATCAATGGGAAGGGTCAGAGAAAGCACATTTTCCTTCTTATGTGTTCAGAATGATGGAAGAAGGAAAAGTGAAGGAGGTTTTTGACCAAAAGATAGATATTGATGAGAAGGATGAAAGAGCTGTGACTGCTCTTAAGGTTGCTCTTTGGTGTATACAAGATGATGTGAGTTTGAGGCCTTCTATGACTAAGGTAGTTCAAATGCTTGAAGGTTTGTGCCCTGTACCTGATCCTCCTTCATTGTCTCATTCCACTACTTACTCAGCTTTCTTGAAAATTAGTGGAGAAGCTACTTCATCTAGTTTTTATAGTAATGTACCCTTGTCTTGTGTTCAGTTATCAGGACCTAGATGA 2391 0.3936 MGLFRCGTLLFYVLLLFRTCQAKDQHISQIYPGFSASRLDWNDHGGFFLLSNSSAFAFGFFTALDVSLFVLVVIHLSSYKVVWTANRGLLVRNSNRFVFDHNGNAYLEGGNGMVWATNTTGQKVRSMELLDSGNLVLLGENGTAIWESFSHPTDTLLPGQAFVEGMTMKSFRNSMNLFHYLGYIAGDLVLYVGFVPTQPYWFLSDNVTGKVHSASLVSNSWNFYDKNGALLWKIVFSDHSDPKSMWAAILDPNGVISFYDLNKGRSANPEAMKIPQDPCGIPEPCDPYYVCFFENWCECPALLKSRFNCKPPNISTCSRSSKTELLYVGEELDYFALKYVAPVSKSTLSACKDSCLGNCSCLVLFHENSTGRCFHFDQTGSFQRFKGNTSGYVSYMKVSIDEGNGNKIGRKNLLLIIFMVILTVLVIVGLITGYRYYMKKDKNFEGYPQDTLEEDDFFDSLSGMPARFTYSALARATKDFSTKIGEGGFGSVYLGVLEDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENNFLLNWDTRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDIYSYGMVLLEIIGGRKNYDQWEGSEKAHFPSYVFRMMEEGKVKEVFDQKIDIDEKDERAVTALKVALWCIQDDVSLRPSMTKVVQMLEGLCPVPDPPSLSHSTTYSAFLKISGEATSSSFYSNVPLSCVQLSGPR. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08438 796 CDD STKc_IRAK 484 751 - -
Seca4g08438 796 Pfam D-mannose binding lectin 81 162 IPR001480 -
Seca4g08438 796 FunFam serine/threonine-protein kinase PBS1-like 447 552 - -
Seca4g08438 796 CDD B_lectin 45 152 IPR001480 -
Seca4g08438 796 SMART blect_4 40 152 IPR001480 -
Seca4g08438 796 Pfam Protein kinase domain 481 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08438 796 Gene3D Transferase(Phosphotransferase) domain 1 553 754 - -
Seca4g08438 796 FunFam S-receptor-like kinase 5 553 757 - -
Seca4g08438 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 169 IPR036426 -
Seca4g08438 796 SUPERFAMILY Protein kinase-like (PK-like) 461 749 IPR011009 -
Seca4g08438 796 Gene3D - 44 151 IPR036426 -
Seca4g08438 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Seca4g08438 796 PIRSF SRK 3 792 IPR024171 GO:0004674
Seca4g08438 796 ProSiteProfiles Protein kinase domain profile. 478 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08438 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 759 - -
Seca4g08438 796 CDD PAN_AP_plant 315 399 - -
Seca4g08438 796 ProSiteProfiles Bulb-type lectin domain profile. 34 150 IPR001480 -
Seca4g08438 796 Gene3D Phosphorylase Kinase; domain 1 449 552 - -
Seca4g08438 796 SMART serkin_6 478 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08438 796 ProSitePatterns Protein kinases ATP-binding region signature. 484 507 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08438 Seca-Chr4 201496996 201499407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08438 422 758 Receptor kinase-like Gene Family AT5G20050 44.818 2.47e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g08438 Pkinase 1.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08438 - - gmx:100786024 1345.1