Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08437 ATGGGAATGGAGTTTGAATCTAAGGTAGCGGCCTATGATTTTCACAATGAGTATAGCAAGAGAGCTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAATGATGGAATTCTCACTTCAAGAAGATTTTCATGCTTTAAAGAGGGTAAACGAGGCACTGACAAACGAGACCACTTGACAAAAGACCCAAGAGCAAAAACCAGAACAGGATGTGAAGCACGTATGATTATTTCACTTGATCGGAAGATTGGGAAATACAAGGTTTATGACTGTGTAGCTCAACATAATCACCCTCTTCAACCACATGAATGTGTTCATATGATTCGCTCTCATCGACGCATATCTGAATCACAAGCATCACAAATTGTATTGGCCGATGAATCTGGATTAAAACCAAAAGATTTTCATGAATATATATCCAAGCAAGCTGGTGGAATAGACACTCTTGGTTATACAAGAAAAGACCATAAGAATTACCTTCGAACTAGAATGAATGAGTCATTAAGGTATGGTGAAGTGGGTGCATTGTTGATGTATTTCAAACGACAGAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGAAAATAACAAATATATTTTGGGCAGATGCACAGATGATAAATGATTATGGCTACTTTGGTGATGTCATCACTTTTGACACCTCATACAAGACTAATAAGGATTATCGACTGTTAGGAGTATTTCTTGGGCTTAATAATCACGGGCAAACGGTTATTTTTGGGGCAACATTGCTTTATGATGAAACAATCCCTTCTTTTCAATGGCTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTTTAACAGATCAAGATGCAGCAATGGCCAAGGCTATTTCTTTAGTTATGCTAGAAACATTTCATGGATTATGCACTTGGCATATAAGAGAAAATGCCTTAAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTTTGCTCACACTTTGAAGCATGCATTGATCAACACGAAGAGGAAGGTGAGTTTCTCAAGGCATGGAATACTTTACTTGTTGAACATAATGTTTCTGAGGATTCATGGCTACATACGATTTTTCGAGTGAAGGAAAAATGGGCATGGGCTTATGTTCGAAAAACTTTCACTACAGGTATGAGATCAACTCAATTAAGTGAGAGCTTCAATTCTGATTTGAAAAACCATTTGAAGTCAGATTTGAATTTGGTACAATTTTTCACACACTTTGAAAGGGTTGTCAATGGCAAACGGTACAATGAGTCAGAAGCAGAGTATGAATCAAGGCATAGGCTCCTCAGATTGAAAATGAAAAAGGCCCTTATGCTTCTACAAGCTGCAAACATTTATACTCCAAAACTTTTTGAGGAATTCCAAGAGGAATATGAGGAATATCAAGGCACATGCATAAAGGAATTGAAAGAAGGGACGTATGTTGTTACAAATTATAATGACAACAAAGAGCGAATAGTAATGGGGCATCTAGTGGATCAAAAGGTTGCTTGTGATTGTCGTAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATTAAGCTACTTCCTCAACACTATATATTAAAGCGGTGGGCAAGAGATGCAAGGTTGGGAAGAAATCGAGATTGGAAAGGACAACACATTGAATTGGACATAAAAGTACATTTCATGAAGCGACACAATGAGTTGTGTTCTCGAATGGTTGATTTGACAAACAAAGCATCTGAATCTCATCAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAATAAAATAATTGATGATATGTTGGCTAAAAACTGCACCCATGAAGTGTCAAGTGGAATGTGTCATGTATCCATATCACTTTCAAATGGAACAACTGACAACAATGTGGACACTATTGATTTTGGCGGAGCAAAAGGTATAAAGAAGCGAGATTCCTCATATAAGGGCAAGAAACGACCTAAATCTTGGGTTGAGAAATTGGCTAGAAAAAGAAAGGGAAATTTATCACAGAAAAAGAGAAAGACTCGAGAAAATTTGGAACAATCTGGGAAACCAATTGATGGTGTGGATACTTTTAATACAAGCCATACTTTTACTCAATTGTTAACGGTAAGAAGTTTTTTATTCATATGTACAAGATAA 2190 0.3639 MGMEFESKVAAYDFHNEYSKRAGFGIRREYGNKSKNDGILTSRRFSCFKEGKRGTDKRDHLTKDPRAKTRTGCEARMIISLDRKIGKYKVYDCVAQHNHPLQPHECVHMIRSHRRISESQASQIVLADESGLKPKDFHEYISKQAGGIDTLGYTRKDHKNYLRTRMNESLRYGEVGALLMYFKRQSENPSFFYDFQMDVEEKITNIFWADAQMINDYGYFGDVITFDTSYKTNKDYRLLGVFLGLNNHGQTVIFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMLETFHGLCTWHIRENALRHVNHLYQKSSQFCSHFEACIDQHEEEGEFLKAWNTLLVEHNVSEDSWLHTIFRVKEKWAWAYVRKTFTTGMRSTQLSESFNSDLKNHLKSDLNLVQFFTHFERVVNGKRYNESEAEYESRHRLLRLKMKKALMLLQAANIYTPKLFEEFQEEYEEYQGTCIKELKEGTYVVTNYNDNKERIVMGHLVDQKVACDCRKFETHGILCSHALKVLDVMNIKLLPQHYILKRWARDARLGRNRDWKGQHIELDIKVHFMKRHNELCSRMVDLTNKASESHQTYTFLSKVYEESNKIIDDMLAKNCTHEVSSGMCHVSISLSNGTTDNNVDTIDFGGAKGIKKRDSSYKGKKRPKSWVEKLARKRKGNLSQKKRKTRENLEQSGKPIDGVDTFNTSHTFTQLLTVRSFLFICTR. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08437 729 MobiDBLite consensus disorder prediction 680 702 - -
Seca4g08437 729 SMART 26again6 511 538 IPR006564 GO:0008270
Seca4g08437 729 Pfam FAR1 DNA-binding domain 13 103 IPR004330 -
Seca4g08437 729 ProSiteProfiles Zinc finger SWIM-type profile. 489 536 IPR007527 GO:0008270
Seca4g08437 729 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 611 IPR031052 GO:0006355
Seca4g08437 729 Pfam SWIM zinc finger 510 533 IPR007527 GO:0008270
Seca4g08437 729 Pfam MULE transposase domain 223 317 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08437 Seca-Chr4 201489262 201491668 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g08437 MULE 9.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08437 - - tpra:123895462 1059.67