Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08425 ATGGCCGTTATATCTTTCTCTTTGCTTCCACCATCCTCCACTCGCTCTTGCTTCTGTGGCGGGATCCATCTCTCTTCCCACAAGAACTTCATCTCGATTCATTCCCCTTCTTCCTTTCCTTCTTTCTCCTCAAACGCTAACTCAAATTCAAAGGTCTCTAGCAGAGGAAGGCGTTTTCACACTGTCCTTGCTGCTTCCGCTGACTACTATGCTACTCTCGGAGTTCCCAAATCCGCTACCGGCAAGGAAATCAAAGCTGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGATGTGAATAAGGAACCGGGGGCAACTGATAAGTTCAAAGAGATTAGTGCTGCATATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGAGTTAAGAGTACAGTGGGAGGTGCATCAAGTGCCTATACGACAAATCCATTTGATTTGTTTGAGACATTTTTTGGGCCAAGTATGAGTGGCTTTGGTGGCATGGATCCAACTGGATTTGGAACACAACGTCGTAGTACTGTTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCCCATTTGGAAACATGTGAAGTTTGTACTGGTACTGGAGCAAAGATAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCATTTGGAATGTTCTCACAGGTTTCAGTATGTCCAACTTGTGGAGGTGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGCATACGGGTGAAGAAAAATATAAAAGTTAAAATTCCTCCTGGGGTTAGCTCAGGCAGTATCCTAAGAGTTGCTGGGGAGGGTGATGCTGGACCAAGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGGTGTGGAAGAGATACCAGGAATTCAAAGAGATGATATTAATCTCCTCTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGACTGTTGTGAAGGTAAAGACAGTTGAAGGCATTTCTGAACTACAAATACCTGCTGGTACACAACCTGGAGATGTCCTTGTCCTTGCAAGGAAAGGTGTGCCAAAATTAAACAAACCATCAATACGTGGTGACCACTTATTCACAGTTAAAGTTACAATACCAAAACGTATCAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGTTGACACAAGCAGTCGTTCAAAATCTCGGCCTAAGACTCACTCTTCCACAGCAAAAAGTACGGAAGGTCCTGCAGCTAAAAAGGCTGAAAGTCCAACAGCAACAGTCGCAGAAAAAACTGAAAAATCAGAAGACCAAGATGATTTATGGAATAAATTTAAGGACTTTGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGCTTAATGATAACCTCTAG 1488 0.4335 MAVISFSLLPPSSTRSCFCGGIHLSSHKNFISIHSPSSFPSFSSNANSNSKVSSRGRRFHTVLAASADYYATLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSAYTTNPFDLFETFFGPSMSGFGGMDPTGFGTQRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGMFSQVSVCPTCGGDGEVISEYCRKCNGEGRIRVKKNIKVKIPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLGVEEIPGIQRDDINLLSTISISYLDAILGTVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLVDTSSRSKSRPKTHSSTAKSTEGPAAKKAESPTATVAEKTEKSEDQDDLWNKFKDFAGSVANGALKWLNDNL. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08425 495 Gene3D - 215 279 - -
Seca4g08425 495 FunFam Chaperone protein dnaJ A6 chloroplastic 215 279 - -
Seca4g08425 495 NCBIfam molecular chaperone DnaJ 68 422 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca4g08425 495 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 202 282 IPR036410 -
Seca4g08425 495 ProSiteProfiles Zinc finger CR-type profile. 202 284 IPR001305 GO:0031072|GO:0051082
Seca4g08425 495 CDD DnaJ 68 121 IPR001623 -
Seca4g08425 495 Gene3D DnaJ domain 65 169 IPR036869 -
Seca4g08425 495 SUPERFAMILY Chaperone J-domain 64 174 IPR036869 -
Seca4g08425 495 Hamap Chaperone protein DnaJ [dnaJ]. 65 479 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Seca4g08425 495 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca4g08425 495 Gene3D - 185 321 - -
Seca4g08425 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 183 338 IPR008971 GO:0006457|GO:0051082
Seca4g08425 495 FunFam Chaperone protein dnaJ A6 chloroplastic 65 171 - -
Seca4g08425 495 MobiDBLite consensus disorder prediction 457 471 - -
Seca4g08425 495 Pfam DnaJ domain 68 129 IPR001623 -
Seca4g08425 495 Gene3D - 331 423 - -
Seca4g08425 495 Pfam DnaJ central domain 215 279 IPR001305 GO:0031072|GO:0051082
Seca4g08425 495 FunFam Molecular chaperone Hsp40/DnaJ family protein 331 423 - -
Seca4g08425 495 MobiDBLite consensus disorder prediction 425 445 - -
Seca4g08425 495 CDD DnaJ_zf 215 279 IPR001305 GO:0031072|GO:0051082
Seca4g08425 495 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca4g08425 495 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca4g08425 495 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca4g08425 495 PRINTS DnaJ domain signature 124 143 IPR001623 -
Seca4g08425 495 FunFam Putative Mitochondrial DnaJ chaperone 273 321 - -
Seca4g08425 495 CDD DnaJ_C 186 409 - -
Seca4g08425 495 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca4g08425 495 SMART dnaj_3 67 124 IPR001623 -
Seca4g08425 495 Pfam DnaJ C terminal domain 188 406 IPR002939 -
Seca4g08425 495 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 38 432 - -
Seca4g08425 495 MobiDBLite consensus disorder prediction 425 471 - -
Seca4g08425 495 SUPERFAMILY HSP40/DnaJ peptide-binding domain 332 417 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08425 Seca-Chr4 200949182 200957641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08425 69 175 C2H2 Transcription Factor Family AT1G74250 37.815 1.30e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08425 4 200949182 200957641 Seca4g08425 4 200949182 200957641 ECH