Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08381 ATGTGGGGTTCGAGCACCGCCTCTGAGGAGGAACCCAGTGAATCTTCGTCCTCCTCCTTCTCCACCTCATTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCCGACGATACCCCTTCTACTCTCCCCCTTGGACGGAAGCCACTGGCGTGTGTTGTTGGAGTGCCAAATCACATGACGTATGCGGATTTTTGCCAGTTCTGTGGTTCATTTATTCACCATATGCTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTGATTCGGTTTGATGAGCAAGAGTCTACGGACAGTTTCTACAAGCACTACAATGGCCGCCGTTTCTCATCTCTCGAGTACACTGGCTCAATTGAACATGCACAACCATCCAATGCCAGTTCAACTGAACAACCTACATGTCCAGTCTGCCTTGAGCGATTAGATCAAGATACGAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCATTGTTCGTGTATTTCAAAATGGGCAGATTCCTCTTGTCCTTGTTTACTAGCCCCACACTTTTATTTTCAGGTTTGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCCATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTCGAAGTGGAAACCAAACGCGTCTGGGATTATGTGGGAGACAATTATGTTCATAGACTCATTCAGTCCAAAACTGATGGAAAGTTGGTTGAGCTGAACACCCACTGTGTGCATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAGCGAGGCTATACTTAACAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGATTTGCTTGCTGCTCAACTTGAAAACCAAAAATCGTATTTTGAATCCTTGTTACAAGAAGTGAAAGAGGAAACTGAAAGAAAAATTTCCAATGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGATGAAGTAAGTTGTAATCCACGCTTGAGAATCTCTTCTTTGGAATAA 1182 0.4332 MWGSSTASEEEPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPSTLPLGRKPLACVVGVPNHMTYADFCQFCGSFIHHMLEMRIVRMDGMEDQYSVLIRFDEQESTDSFYKHYNGRRFSSLEYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPCLLAPHFYFQVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNTHCVHADNGCGSCSCEDNAMSEAILNSKVEAIVNEYNDLLAAQLENQKSYFESLLQEVKEETERKISNAVQKAISLKQQKIQSKIDRCNKEKKFLDEVSCNPRLRISSLE. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08381 393 CDD RRM_BRAP2_like 61 128 - -
Seca4g08381 393 Pfam BRCA1-associated protein 2 53 128 IPR011422 -
Seca4g08381 393 PANTHER BRCA1-ASSOCIATED PROTEIN 7 382 - -
Seca4g08381 393 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g08381 393 ProSiteProfiles Zinc finger RING-type profile. 149 186 IPR001841 -
Seca4g08381 393 SMART Zf_UBP_1 209 258 IPR001607 GO:0008270
Seca4g08381 393 CDD RING-H2_BRAP2 147 200 IPR047243 -
Seca4g08381 393 Coils Coil 324 362 - -
Seca4g08381 393 ProSiteProfiles Zinc finger UBP-type profile. 193 286 IPR001607 GO:0008270
Seca4g08381 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 186 IPR013083 -
Seca4g08381 393 SUPERFAMILY RING/U-box 165 274 - -
Seca4g08381 393 SMART ring_2 149 188 IPR001841 -
Seca4g08381 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 290 IPR013083 -
Seca4g08381 393 Pfam Zn-finger in ubiquitin-hydrolases and other protein 210 269 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08381 Seca-Chr4 199008124 199010628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08381 145 189 C3H Transcription Factor Family AT1G72220 46.667 7.94e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08381 K10632 - gmx:100794688 689.878