Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08379 ATGGAGGGCAACCCCTGGCGGAAATGGTCTTCCGATATGGAAATGGATGATCATATCAATGAATGCTTGTGCCACACCAACACTTTTGATGAAGAGTTCCTCAGAGATATCCTGCTGCAGCCACAAGATTCCACTGCCCCTGTTATTGGCAGTAGTAGTTCTTTATTATTTGGCCAAACTAGCTTTGAGAGGCCAATTAACACCAACAACAACCTTGAGGTGAATAAGAACAACTCATCATCCATCATTTCTCATTCTCAACAACCAGAATTAAAGCCACTAGCCTCTGCTCCTCCAACAACTTATATACTTTCTTTTGACAAATCCACTGCTTTGTTACCAACTGATCATCAGCATGATCATCCTTCCCCTGTTTGGAATAAAGAGGTTTCTCAATCCCAATTGGGAAATAATAATCATCACCACCCCACAGATTCTTTGCCTTTGTCATCATCATCATCAAGGGCCAACCAAGGAACCAAGAAGACTAGAAGTGCTTCTGAGACATTAGATCACATAATGTCAGAGAGAAATAGGAGACAGGAACTCACAAGGAAGTTCATAGCACTTTCAGCCACAATACCTGGCTTGAAGAAGCTGGACAAGGCCCATGTACTAAGAGAAGCTATCATTTACGTGAAACAACTTCAAGAACGTGTACAAGAGTTAGAAGAAGATATCAAGAAGAACGGTGTGGAATCAGTGATCACCATAACAAGATCTCATCTCTGTATTGAAGATGACACTCCCTTTGGTGAAACCAAAACTGATGAACGCTATGGGCCCAATGAAGCACTCCCTGAGGTTGAAGCTAGAGTCCTAGGGAAGGAAGTTTTAATCAAAATTCACTGTGGGAAACAAAAGGGTATTTTGCTCAAAATAATGTCCCAGCTTGAAAGTCTTCATCTCTCCATTTCCACTAGCAACGTCTTGCCATTTGGGAACACTCTTGACATCACCATTATTGCTCAGATGGGTGACAAATACAACTTGATAGTGAAGGATCTAGTGAAAAAGCTGAGACTAGTGGCTACTCTGCAGGCATGCGATGTGAAACAATGA 1062 0.419 MEGNPWRKWSSDMEMDDHINECLCHTNTFDEEFLRDILLQPQDSTAPVIGSSSSLLFGQTSFERPINTNNNLEVNKNNSSSIISHSQQPELKPLASAPPTTYILSFDKSTALLPTDHQHDHPSPVWNKEVSQSQLGNNNHHHPTDSLPLSSSSSRANQGTKKTRSASETLDHIMSERNRRQELTRKFIALSATIPGLKKLDKAHVLREAIIYVKQLQERVQELEEDIKKNGVESVITITRSHLCIEDDTPFGETKTDERYGPNEALPEVEARVLGKEVLIKIHCGKQKGILLKIMSQLESLHLSISTSNVLPFGNTLDITIIAQMGDKYNLIVKDLVKKLRLVATLQACDVKQ. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08379 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Seca4g08379 353 Gene3D - 157 231 IPR036638 GO:0046983
Seca4g08379 353 MobiDBLite consensus disorder prediction 125 164 - -
Seca4g08379 353 SMART finulus 173 222 IPR011598 GO:0046983
Seca4g08379 353 Pfam Helix-loop-helix DNA-binding domain 172 217 IPR011598 GO:0046983
Seca4g08379 353 MobiDBLite consensus disorder prediction 113 175 - -
Seca4g08379 353 Coils Coil 206 233 - -
Seca4g08379 353 PANTHER BHLH TRANSCRIPTION FACTOR 41 344 - -
Seca4g08379 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08379 Seca-Chr4 198997326 199001520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08379 148 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.949 9.67e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08379 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08379 - - gmx:100809223 384.03