Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08376 ATGGAGGATTGGTGGGAGAATTGGTTCGCTGATTTGGATATGGACGGCGATGACTCGTTCAAGTTCAACCAATGCCAAATGAATGCTTTTTTGAACATTGATGATGAAGATCAGCATCGCGGAGACATAAGGCAGCAGCAAGTAAACTTGTCTTGTAGAACTGAAACACAATCTCATCACTCTCTGCAGTACTACCCTTCTTGCTTAGGCTTCAAGGGTCAGTCTTCGCATAGTTCGAATGTAGTTTGCTGGGGACCATCGCTGGAGGAATTAGGCCATTCTTCCTCAAAAAGGACCCTAAGCTTTGAACCCAGTGTGACCCAAGGACAAGGAAGAAAGAGGGGTAGAAGCTCTTCAGAGATACAGGGTCACATAATGGCTGAGAGAAAAAGGAGGCAGGAAATGGCAGAGAGATTCATAACACTTTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTTCTTCGGGAAGCTATTAATTACGTGAAACAACTTAAAGAACGCATTGCAGTGCTGGAAGAAGAAAGCAAGCAAAAAAGTACCACGTCAATAATCTCTATTAAGAAATCTCACTCTCATCCACTTTCCGAAATAAACACCTTGGGTTCCAACAATCAAATGCTCCCTCATGTTGAAGCAATAGGCTTAGAGCCAGAAAAACAACTACTTATTAGAGTCCATTGTGAGAAACGAAATGGCATCTTGCTCAAAATATTGACCCTACTTCAAAATATACACCTCTCTATTGCCAGTAGCAGCGTACTGCCATTTGGGAAAAATACTCTCAGCATTACCATTATTGCTCAGAAGGGTGAGGAATATAACATGACAGGAGAAGAATTGGTAAAAAGTTTGAGACAAGGTCCTCTCAAAGTATATGACATGCACATGTGA 903 0.4197 MEDWWENWFADLDMDGDDSFKFNQCQMNAFLNIDDEDQHRGDIRQQQVNLSCRTETQSHHSLQYYPSCLGFKGQSSHSSNVVCWGPSLEELGHSSSKRTLSFEPSVTQGQGRKRGRSSSEIQGHIMAERKRRQEMAERFITLSAIIPGLKKIDKASVLREAINYVKQLKERIAVLEEESKQKSTTSIISIKKSHSHPLSEINTLGSNNQMLPHVEAIGLEPEKQLLIRVHCEKRNGILLKILTLLQNIHLSIASSSVLPFGKNTLSITIIAQKGEEYNMTGEELVKSLRQGPLKVYDMHM. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08376 300 MobiDBLite consensus disorder prediction 95 116 - -
Seca4g08376 300 PANTHER BHLH TRANSCRIPTION FACTOR 47 290 - -
Seca4g08376 300 MobiDBLite consensus disorder prediction 95 121 - -
Seca4g08376 300 Pfam Helix-loop-helix DNA-binding domain 124 169 IPR011598 GO:0046983
Seca4g08376 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 184 IPR036638 GO:0046983
Seca4g08376 300 SMART finulus 125 174 IPR011598 GO:0046983
Seca4g08376 300 Coils Coil 158 185 - -
Seca4g08376 300 Gene3D - 110 184 IPR036638 GO:0046983
Seca4g08376 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08376 Seca-Chr4 198877556 198880373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08376 110 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.667 3.67e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08376 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08376 - - gmx:100809351 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g12061 4 261487371 261490637 Seca4g08376 4 198877556 198880373 PCT