Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08375 ATGGAAAAGTCATGGGAAAATTGGCCTCTTCATATGGAAATCGGTCATCATGATAAGGATCTGTTCCAGCAGTGCCAAAGTGGCGATGATGACGAGTTCCTCAGAGACATCCTGCAGCAACCAGCTTTGTCTGCTGAAAGTGAAAGCCAATCTTTTACCCATAATAACACCTTCACCGCCACAGTTGCCGGAGCCACCGTGACCACCACCACCACCGACGGCAGCAGTTTATCCTCGGATGAGATAATCTGCTCCGATTTTCCTGGAAAAAAGCCTCGTCTCTCGACAGCTCCGAGGACATACATTTTGTCCTTCGATAACTCCACAATAATACCAGCAACACCAGAACCTGTCGGCCAGGGTACGGGTACCCGTTCTTCTAAATCTAATTCGCCTCTGCCATCGAAAAAACGGACACTGGAAAATCCAAACAGTGAACCGAAACCAAGGGGTAACCAAGGGGAAAAGAAGAGTAGAAGCGATTCGCAGATTATGGATCACATATTGGCGGAGAGAAAAAGGAGACAGGAACTGACAGAGAAATTCATAGCACTATCAGCTACTATCCCGGGCTTGAAGAAGACGGACAAGACTTCTATACTTCGCGAAGCTATCAGTTATGTGAAAGAACTTCAAGAACGTGTGACGGAGCTAGAACAGCGAAACAAGAGAGGCAAAGAATCAAAGGTAATCCTGAAGAAGACTAATGATGATCCGTGTGCAAATGAAGACACGACTTCAAGTGAAACAAATTCTGATGAGGATTGCTGTAGACCCAGCCGATTGCTCCCTGATGTTGAAGCAAGAGTGTTGGAGAATGAAGTACTCATTGAGATCCATTGTGAGAAGGAAAATGGCATACAGCTCAAGATATTGGAGCTACTTGAAAATCTTCATCTCTATGTCACTGGCAGCAGTGTGTTGCCGTTTGGGAATTCAACTCTTGGCATTACTATCATCGCTCAGGTACGCAGTGCTAGAGTTTCATGA 990 0.4566 MEKSWENWPLHMEIGHHDKDLFQQCQSGDDDEFLRDILQQPALSAESESQSFTHNNTFTATVAGATVTTTTTDGSSLSSDEIICSDFPGKKPRLSTAPRTYILSFDNSTIIPATPEPVGQGTGTRSSKSNSPLPSKKRTLENPNSEPKPRGNQGEKKSRSDSQIMDHILAERKRRQELTEKFIALSATIPGLKKTDKTSILREAISYVKELQERVTELEQRNKRGKESKVILKKTNDDPCANEDTTSSETNSDEDCCRPSRLLPDVEARVLENEVLIEIHCEKENGIQLKILELLENLHLYVTGSSVLPFGNSTLGITIIAQVRSARVS. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08375 329 Coils Coil 201 228 - -
Seca4g08375 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Seca4g08375 329 MobiDBLite consensus disorder prediction 108 163 - -
Seca4g08375 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 226 IPR036638 GO:0046983
Seca4g08375 329 MobiDBLite consensus disorder prediction 236 255 - -
Seca4g08375 329 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983
Seca4g08375 329 Gene3D - 161 234 IPR036638 GO:0046983
Seca4g08375 329 PANTHER BHLH TRANSCRIPTION FACTOR 47 324 - -
Seca4g08375 329 SMART finulus 168 217 IPR011598 GO:0046983
Seca4g08375 329 MobiDBLite consensus disorder prediction 108 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08375 Seca-Chr4 198843839 198848273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08375 158 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.674 1.02e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08375 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08375 - - aprc:113856039 359.762