Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Seca4g08375
ATGGAAAAGTCATGGGAAAATTGGCCTCTTCATATGGAAATCGGTCATCATGATAAGGATCTGTTCCAGCAGTGCCAAAGTGGCGATGATGACGAGTTCCTCAGAGACATCCTGCAGCAACCAGCTTTGTCTGCTGAAAGTGAAAGCCAATCTTTTACCCATAATAACACCTTCACCGCCACAGTTGCCGGAGCCACCGTGACCACCACCACCACCGACGGCAGCAGTTTATCCTCGGATGAGATAATCTGCTCCGATTTTCCTGGAAAAAAGCCTCGTCTCTCGACAGCTCCGAGGACATACATTTTGTCCTTCGATAACTCCACAATAATACCAGCAACACCAGAACCTGTCGGCCAGGGTACGGGTACCCGTTCTTCTAAATCTAATTCGCCTCTGCCATCGAAAAAACGGACACTGGAAAATCCAAACAGTGAACCGAAACCAAGGGGTAACCAAGGGGAAAAGAAGAGTAGAAGCGATTCGCAGATTATGGATCACATATTGGCGGAGAGAAAAAGGAGACAGGAACTGACAGAGAAATTCATAGCACTATCAGCTACTATCCCGGGCTTGAAGAAGACGGACAAGACTTCTATACTTCGCGAAGCTATCAGTTATGTGAAAGAACTTCAAGAACGTGTGACGGAGCTAGAACAGCGAAACAAGAGAGGCAAAGAATCAAAGGTAATCCTGAAGAAGACTAATGATGATCCGTGTGCAAATGAAGACACGACTTCAAGTGAAACAAATTCTGATGAGGATTGCTGTAGACCCAGCCGATTGCTCCCTGATGTTGAAGCAAGAGTGTTGGAGAATGAAGTACTCATTGAGATCCATTGTGAGAAGGAAAATGGCATACAGCTCAAGATATTGGAGCTACTTGAAAATCTTCATCTCTATGTCACTGGCAGCAGTGTGTTGCCGTTTGGGAATTCAACTCTTGGCATTACTATCATCGCTCAGGTACGCAGTGCTAGAGTTTCATGA
990
0.4566
MEKSWENWPLHMEIGHHDKDLFQQCQSGDDDEFLRDILQQPALSAESESQSFTHNNTFTATVAGATVTTTTTDGSSLSSDEIICSDFPGKKPRLSTAPRTYILSFDNSTIIPATPEPVGQGTGTRSSKSNSPLPSKKRTLENPNSEPKPRGNQGEKKSRSDSQIMDHILAERKRRQELTEKFIALSATIPGLKKTDKTSILREAISYVKELQERVTELEQRNKRGKESKVILKKTNDDPCANEDTTSSETNSDEDCCRPSRLLPDVEARVLENEVLIEIHCEKENGIQLKILELLENLHLYVTGSSVLPFGNSTLGITIIAQVRSARVS.
330
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Seca4g08375
329
Coils
Coil
201
228
-
-
Seca4g08375
329
ProSiteProfiles
Myc-type, basic helix-loop-helix (bHLH) domain profile.
162
211
IPR011598
GO:0046983
Seca4g08375
329
MobiDBLite
consensus disorder prediction
108
163
-
-
Seca4g08375
329
SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain
163
226
IPR036638
GO:0046983
Seca4g08375
329
MobiDBLite
consensus disorder prediction
236
255
-
-
Seca4g08375
329
Pfam
Helix-loop-helix DNA-binding domain
167
212
IPR011598
GO:0046983
Seca4g08375
329
Gene3D
-
161
234
IPR036638
GO:0046983
Seca4g08375
329
PANTHER
BHLH TRANSCRIPTION FACTOR
47
324
-
-
Seca4g08375
329
SMART
finulus
168
217
IPR011598
GO:0046983
Seca4g08375
329
MobiDBLite
consensus disorder prediction
108
149
-
-
Showing 1 to 10 of 10 entries
Previous
1
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Seca4g08375
Seca-Chr4
198843839
198848273
Dispersed/Proximal
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Seca4g08375
158
325
Basic Helix-Loop-Helix Transcription Factor Gene Family
AT4G37850
47.674
1.02e-38
138
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
bHLH
Seca4g08375
HLH
3.4e-09
No_clan
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Seca4g08375
-
-
aprc:113856039
359.762
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows