Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08372 ATGGAGAGTGGAGACCAAATATCATCGCTCATGGCAGACCCCACTTCATATCCGGTCTCCCACTTTCCAGTGGAGCAGTCATGGGACACTTTGCATCTTCACATGGAAATGGGTGATGATGAAAAGCATCTATTTGAACAGTGCCACAATAGTGATGATGAAGAGTTCTTGAGAGACATCCTGCAGCAACCAGCTTTGTCTTTTGATGAATGTCAAAGTGAATCTTTTGTCCAAAATAACAACTTCACTGCCACAACCACAACAAATGAGATGGCGTGCTCCTCTCAGAAAAGGCTTCATCCCTCATCCTCGTCTCCAAAGACATTCATTCTGTCTTTCGATAAATGTAAAATAATACCAGCTTCACCAGAACCTCTCCTTGGTCATGAACGAAAGGGTGGGAAGGGTACAAGTTTTTCTAAATCTAATTCATCAACTGTGAAATCAAAAAAAGGGACCCTGGAACTGGAAAATCTCAAGCTTGGACCAAAACAGAGTGCCACCCAAGGAGCTGGAAAGCAAAGTAGGAGCGGTTCCAAAACTGTGGATCACCTTATTGCAGAGAGAAAAAGGAGACAGGACTTGGCAGAGAAGTTCATAGCACTTTCATCCATTGTTCCGGGCTTGAAGAAGATAGACAAGACTTCTATAGTATGTGAAACTATCAGTTATGTGAAACAACTTCACGAGCGTGTGACGGAGCTAGAACAACCGCGAGACAATACAGGCAATGAATCACTGGCATACCTCAAGAAGACTAGTCTGTGTGGTGCAAATGAAACAAAGTCTGAGGATTGCTGTAGGCCCAGTGAATTGCTCCCTGATGTTAAAGCAAGAGTGTTGAAGAATGAGGTAATTATTTGGATCCATTGTAAGAAGGAAAATGGCATTGAGCTAAAAATATTGGACCTGCTTGAAAATCTTCATTTGTGTGTCACCGGCAGCAGCGTATTGCCGTTTGGGAATTCAACTCTTAACATTACTATACTCGCCCAGGTAATGGGTGACGCATACACAATGACGGTGGTTGGTCTCGTGGAAAACGTAAGGCAAGTGTTATTGAATGACATAAGCAGCAATATCGATTAG 1089 0.4298 MESGDQISSLMADPTSYPVSHFPVEQSWDTLHLHMEMGDDEKHLFEQCHNSDDEEFLRDILQQPALSFDECQSESFVQNNNFTATTTTNEMACSSQKRLHPSSSSPKTFILSFDKCKIIPASPEPLLGHERKGGKGTSFSKSNSSTVKSKKGTLELENLKLGPKQSATQGAGKQSRSGSKTVDHLIAERKRRQDLAEKFIALSSIVPGLKKIDKTSIVCETISYVKQLHERVTELEQPRDNTGNESLAYLKKTSLCGANETKSEDCCRPSELLPDVKARVLKNEVIIWIHCKKENGIELKILDLLENLHLCVTGSSVLPFGNSTLNITILAQVMGDAYTMTVVGLVENVRQVLLNDISSNID. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08372 362 SMART finulus 185 234 IPR011598 GO:0046983
Seca4g08372 362 Gene3D - 172 244 IPR036638 GO:0046983
Seca4g08372 362 MobiDBLite consensus disorder prediction 162 181 - -
Seca4g08372 362 PANTHER BHLH TRANSCRIPTION FACTOR 56 354 - -
Seca4g08372 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 245 IPR036638 GO:0046983
Seca4g08372 362 MobiDBLite consensus disorder prediction 124 183 - -
Seca4g08372 362 Pfam Helix-loop-helix DNA-binding domain 183 229 IPR011598 GO:0046983
Seca4g08372 362 MobiDBLite consensus disorder prediction 137 152 - -
Seca4g08372 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08372 Seca-Chr4 198736864 198740731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08372 165 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.117 2.87e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g08372 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08372 - - aprc:113856039 293.508