Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08370 ATGAACGGTGAAATTTTCATACAAGCAGCCCCCACTGCCACCTTTCTTCCTAAATCAAGCCCCGCCATAACCCACTTCACATTTGAACCAATTTCCTCCACAAACCACCTCATCAACTCCTTCTCTCCTCCATGCAACCAAACAAGTAGTGATCTCGAAGGAATTGCTGCCATTGTTGGAGAGCATGTCCTCTTCGGAGGCAAACAACACAATGGCACTCAAAACAACAATGAAACAAGTTCCAAAACCCCAAAGAAAGAAGAGAAAACCGGTCACAATGATACCGATAACAATAACAGTAACATTTCTTCTGTGAGTAAGAGATACAGAGGAGTGAGGAAGAGACCCTGGGGGAGATGGTCAGCGGAGATACGCGACCGAATCGGGCGGTGCCGACACTGGCTAGGAACTTTTGACACGGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCAGCGAGGCGCTTGAGGGGCTCCAAAGCTCGAACTAACTTTGAGATACCCTCTGTTTTGCCAACTTCCTCTTCTTCCGAAGTGAAAAGGGGGGTCAGTGGTGACGGTGGTTCTCGTAAGGCTAAAGGTGTACGTGGCAGTGGTAGGAAGTGCTCTGTTGTTACCTCTGTTGCTCAGTTGTTCAGTGGGGTGCCTGAAATTGTAAGAGGTAGTAATGGTGATGAGAAAGAAAGCAAAGGGTTTGGGAGTGTGGAGCTGGACTTGAAACTTGGTGTAACCTTTGTTGGTAGAAATTAA 747 0.4859 MNGEIFIQAAPTATFLPKSSPAITHFTFEPISSTNHLINSFSPPCNQTSSDLEGIAAIVGEHVLFGGKQHNGTQNNNETSSKTPKKEEKTGHNDTDNNNSNISSVSKRYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPTSSSSEVKRGVSGDGGSRKAKGVRGSGRKCSVVTSVAQLFSGVPEIVRGSNGDEKESKGFGSVELDLKLGVTFVGRN. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08370 248 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Seca4g08370 248 MobiDBLite consensus disorder prediction 67 108 - -
Seca4g08370 248 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
Seca4g08370 248 CDD AP2 107 166 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 MobiDBLite consensus disorder prediction 171 196 - -
Seca4g08370 248 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca4g08370 248 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 87 178 - -
Seca4g08370 248 FunFam Ethylene-responsive transcription factor 2 107 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08370 Seca-Chr4 198679567 198680313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08370 16 171 AP2-EREBP Transcription Factor Family AT1G80580 51.235 1.19e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g08370 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08370 - - pcin:129290286 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08370 4 198679567 198680313 Seca4g08370 4 198679567 198680313 ECH