Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08365 ATGAATCTTCTTGTTCTGTTTTTTCCCATTTGGGTGCTGAGCATTTCTCTTTCATCAGCAATTCTTCATGCTGCAGCATCCCCCATTTATGTCTCTCAATCTTCTGCAAATGCACAAGCAGTATCTCCAGGAATTCAGGAGGTTAGAATAGTGCACCACCAGAATTTGAACAAGAGAATTCTAATAGCACTAATTGCTTGTTCTACTCTTCTTGGTGGAACCTTCCTATTCTTATTATATGTCTGGTTCCGTCGACATAAAAACTTAAGAAGCTCCAATATTAAAAGCCATGGAACCATGGAGGCTGCGAAAGGGGAAGCCTTAAGCTCTAATGATGCTAAAATTAGCTACTCAAGGGTGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTTTCAGTTGTTAGAGGCTGCAACAAACAACTTTAGCTCAAGTAATGTTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGGGCTTGTCTTGATGAACATTTCCGAGCAGCTGTGAAAAAAGCAGATAGTAATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATTAAACTTCTGGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGACAATGGATCTCTGGAAACTCAATTGCATGGGCCTAATCGTGGATCATCTTTAACTTGGCATCTCCGATTAAGAATTGCAGTTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCACTCCAATCCTCCTGTAGTTCATAGAGACCTAAAATCTTCTAATGTTCTTTTGGATTCTAACTTGAATGCCAAGCTATCAGATTTTGGACTTGCTATAGCTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATACGTGGCACCTGAGTACATATCACATGGTATACACTATTTGCTCCTTTCTGGAACCAGGTGGTTATAG 978 0.3957 MNLLVLFFPIWVLSISLSSAILHAAASPIYVSQSSANAQAVSPGIQEVRIVHHQNLNKRILIALIACSTLLGGTFLFLLYVWFRRHKNLRSSNIKSHGTMEAAKGEALSSNDAKISYSRVADKKSSVAIFDFQLLEAATNNFSSSNVMGESGSRIVYRACLDEHFRAAVKKADSNADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMDNGSLETQLHGPNRGSSLTWHLRLRIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNLNAKLSDFGLAIASGMQHKNMKMSGTLGYVAPEYISHGIHYLLLSGTRWL. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08365 325 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 314 - -
Seca4g08365 325 Gene3D Transferase(Phosphotransferase) domain 1 215 317 - -
Seca4g08365 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Seca4g08365 325 FunFam Os07g0541700 protein 215 303 - -
Seca4g08365 325 SMART serkin_6 142 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08365 325 Gene3D Phosphorylase Kinase; domain 1 102 214 - -
Seca4g08365 325 Pfam Protein kinase domain 147 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08365 325 ProSiteProfiles Protein kinase domain profile. 142 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g08365 325 SUPERFAMILY Protein kinase-like (PK-like) 123 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08365 Seca-Chr4 198419258 198421820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08365 1 296 Receptor kinase-like Gene Family AT1G80640 48.232 2.03e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca4g08365 Pkinase 5.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08365 - - gmx:100811188 495.738