Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08349 ATGGCAGACCTCGAACATATTAAGAAGGAGGCAGTTGATCTCGAGCGTATACCTGTTGATGAAGTGTTCCGAGAATTAAATTGTTCCAGAGAAGGTCTCACTAATGACGAAGGTCAAAAGAGGTTGCAAGTGTTTGGGCCCAACAAGTTGGAAGAAAAGAAGGAAAGCAAGTTCCTCAAATTCTTGGGCTTTATGTGGAACCCTCTTTCATGGGTCATGGAAGCCGCTGCTATCATGGCCATTGCATTGGCAAATGGAGGGGGTGAGCCACCAGATTGGCAGGATTTTGTTGGAATAGTGGTGTTGCTATTTGTCAACTCAACCATTAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGAGTGAGCAGGATGCTTCTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGATATCATCCCAGCTGATGCACGTCTCTTGGAAGGAGATGCTCTCAAGATTGATCAATCTGCACTCACTGGTGAGTCCTTGCCTGTTACTAGGAACCCTGGTGATGAAGTCTTCTCTGGCTCCACAGTAAAGCAAGGAGAGATTGAGGCTGTTGTGATTGCCACTGGAATCAACACCTTCTTTGGTAAGGCTGCTCACTTGGTGGACAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCTATTGGTAACTTCTGTATCTGCTCAATTGCTATTGGCATGATAGTGGAGATTGTTGTCATGTACCCCATTCAGCACCGCAAGTATAGGAAGGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCCATGCCAACAGTGTTGTCAGTGACAATGGCTATTGGTTCCCATAAGCTGTCTGAGCAAGGTGCTATCACAAAAAGAATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGTAGTGACAAGACTGGCACTCTAACACTCAACAAGCTTACTGTAGACAAGAGTTTGATTGAGGTTTTCTCAAGAGATACTGACAAGGACACAGTGATTTTACTTGGAGCTAGGGCCTCAAGGGTAGAGAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGATCCAAAGGAGGCTAGAGAAGGCATTACAGAGGTGCATTTCCTACCCTTCAATCCAGTAGACAAGCGTACAGCCATAACATACTATGACACTGAGGGTAATTGGTACCGAGTAAGCAAAGGAGCACCAGAGCAGATCATAGAACTCTGCAATCTTAGAGAAGATGTGAAGAAGAAAGCTCATTCCATCATTGATAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTATTTCCAAACAAGAAATTCCAGAAAAGAACAAGGATGGTGCAGGTGGACCATGGCAATTTGTGGGTCTGTTACCTCTCTTTGACCCACCAAGGCATGATAGTGCAGAGACTATCAAGCGTGCCCTTGTTCTTGGAGTGAATGTTAAGATGATCACTGGTGATCAGTTAGCTATTGGCAAAGAAACTGGTCGTAGGCTTGGTATGGGATGTAACATGTACCCTTCATCTTCCCTCCTTGGTGAGCACAAAGATGAGTCTATTGCTGCTCTTCCAGTTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTGAAGAGACTTCAAGATAGGAACCACATATGTGGAATGACCGGAGATGGTGTGAATGATGCTCCTGCTTTGAAAAGGGCAGATATTGGAATTGCAGTGGCTGATGCAACAGATGCAGCTAGAGGTGCATCTGACATAGTCCTCACTGAGCCTGGTTTGAGTGTTATAGTGCATGCAGTGTTGACAAGCAGAGCAATTTTCCAAAGAATGAAGAACTACACTATTTATGCTGTTTCAATTACAATCCGAATAGTACTTGGCTTTATGCTCCTTGCTCTCATTTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTAAATGATGGGACAATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGCTGAGAGAGATTTTTGCCACAGGTGTTGTGCTTGGTGCTTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTCATTCCTCTAATTTCTTCTCGGACAAATTTGGAGTGAGATCTATTAGGAATAACCACAATGAGCTCACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAAGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTACATTGAACGCCCTGGCATCCTTCTTATTGTTGCCTTTTTGATAGCACAATTGATTGCCACAATCATAGCTGTGTATGCAAACTGGGGCTTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGTCTTGTTTTTTATGTCCCCATGGATATCCTTAAGTTCATCATAAGATATGCATTGAGTGGCAAGGCATGGAATACTGTTACTGAAAGCAGGATTGCTTTCACCTCTAAGAAAGACTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTTCATGGGCTGAATCCTCCTGAAACAGAAGAAATGTTAAATGAAAAGAACAACTATAGAGAGTTGTCTGAACTTGCAGAACAAGCTAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGGCATGTTGAGTCTGTTGTGAAACTGAAGGGACTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA 2850 0.4382 MADLEHIKKEAVDLERIPVDEVFRELNCSREGLTNDEGQKRLQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIVVLLFVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDASILVPGDIISIKLGDIIPADARLLEGDALKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGINTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMIVEIVVMYPIQHRKYRKGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSRDTDKDTVILLGARASRVENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTAITYYDTEGNWYRVSKGAPEQIIELCNLREDVKKKAHSIIDKFADRGLRSLAISKQEIPEKNKDGAGGPWQFVGLLPLFDPPRHDSAETIKRALVLGVNVKMITGDQLAIGKETGRRLGMGCNMYPSSSLLGEHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQDRNHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVHAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGVVLGAYLAVMTVVFFWAAHSSNFFSDKFGVRSIRNNHNELTAAVYLQVSIVSQALIFVTRSRSWSYIERPGILLIVAFLIAQLIATIIAVYANWGFAKIKGIGWGWAGVIWLYSLVFYVPMDILKFIIRYALSGKAWNTVTESRIAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08349 949 Coils Coil 893 920 - -
Seca4g08349 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 329 335 IPR018303 -
Seca4g08349 949 NCBIfam HAD-IC family P-type ATPase 99 358 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 NCBIfam HAD-IC family P-type ATPase 561 671 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 Pfam E1-E2 ATPase 129 306 - -
Seca4g08349 949 FunFam ATPase 4 plasma membrane-type 572 813 - -
Seca4g08349 949 FunFam Plasma membrane ATPase 479 634 - -
Seca4g08349 949 Pfam Cation transporter/ATPase, N-terminus 17 79 IPR004014 -
Seca4g08349 949 SFLD p-type atpase 309 638 IPR044492 -
Seca4g08349 949 Gene3D - 92 813 - -
Seca4g08349 949 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Seca4g08349 949 PANTHER CALCIUM-TRANSPORTING ATPASE 16 881 - -
Seca4g08349 949 Gene3D - 324 623 IPR023214 -
Seca4g08349 949 SFLD C1.7: P-type atpase like 309 638 - -
Seca4g08349 949 SUPERFAMILY Calcium ATPase, transduction domain A 130 227 IPR008250 -
Seca4g08349 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 845 IPR023298 -
Seca4g08349 949 NCBIfam plasma-membrane proton-efflux P-type ATPase 32 804 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca4g08349 949 SUPERFAMILY HAD-like 323 634 IPR036412 -
Seca4g08349 949 Pfam haloacid dehalogenase-like hydrolase 323 600 - -
Seca4g08349 949 PRINTS H+-transporting ATPase (proton pump) signature 558 574 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 PRINTS H+-transporting ATPase (proton pump) signature 758 779 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 PRINTS H+-transporting ATPase (proton pump) signature 617 642 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 PRINTS H+-transporting ATPase (proton pump) signature 443 461 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 PRINTS H+-transporting ATPase (proton pump) signature 586 602 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 481 492 - -
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 586 605 - -
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 177 191 - -
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 503 513 - -
Seca4g08349 949 PRINTS P-type cation-transporting ATPase superfamily signature 609 621 - -
Seca4g08349 949 FunFam Plasma membrane ATPase 130 214 - -
Seca4g08349 949 Gene3D - 339 486 IPR023299 GO:0000166
Seca4g08349 949 CDD P-type_ATPase_H 32 839 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca4g08349 949 FunFam Plasma membrane ATPase 339 486 - -
Seca4g08349 949 Gene3D - 130 214 - -
Seca4g08349 949 Gene3D - 898 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08349 Seca-Chr4 198310589 198315819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08349 5 949 Primary Pumps ATPases AT2G07560 82.222 0.0 1600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08349 K01535 - gmx:100796240 1689.47