Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08348 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGACATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGTATTTTGTTTTGATGAAACATTGTTGTTTTGTTTACAGGAAAACTAGAATATGGTTAGGAACATTTGAAACAGCAGAGGATGCAGCAAGAGCTTATGATGAAGCAGCAAGGCTCATGTGTGGTCCAAAAGCACGCACCAATTTCCCATACAATCCCAATGAGACACAATCCTCTTCATCTAAGCTTCTCTCTGCAACTTTGACAGCAAAACTACACAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGTCCAAGCAGAAACAACCACAGAAAGAGCCTCAACAAGGATCCAATGTCCCATTTGCCTATGGCAGTGACATTGCTGGAACAAGCACTGAGAAGAGACATGATGAGGAACTACAGTGGCTAGAAGGGAATTGGGTTAGTGAGGAAGGACAAGTTGAAGTAGCAGAGCAACAATTTCAGCCAGTTCTTGAGGATGATCACATAGAGCAGATGATTCAGGAATTGCTTCATTATGGGTCAATTGAGCTTAGTTCTGTTGGCTCAGCTTAA 600 0.44 MARPQQRYRGVRQRHWGSWVSEIRHPLLYFVLMKHCCFVYRKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNETQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQPQKEPQQGSNVPFAYGSDIAGTSTEKRHDEELQWLEGNWVSEEGQVEVAEQQFQPVLEDDHIEQMIQELLHYGSIELSSVGSA. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08348 199 Pfam AP2 domain 7 69 IPR001471 GO:0003700|GO:0006355
Seca4g08348 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 178 - -
Seca4g08348 199 MobiDBLite consensus disorder prediction 110 133 - -
Seca4g08348 199 ProSiteProfiles AP2/ERF domain profile. 7 77 IPR001471 GO:0003700|GO:0006355
Seca4g08348 199 SMART rav1_2 7 83 IPR001471 GO:0003700|GO:0006355
Seca4g08348 199 FunFam Ethylene-responsive transcription factor 2 6 78 - -
Seca4g08348 199 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca4g08348 199 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Seca4g08348 199 Gene3D AP2/ERF domain 6 78 IPR036955 GO:0003700|GO:0006355
Seca4g08348 199 MobiDBLite consensus disorder prediction 110 135 - -
Seca4g08348 199 SUPERFAMILY DNA-binding domain 7 79 IPR016177 GO:0003677
Seca4g08348 199 CDD AP2 6 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08348 Seca-Chr4 198298379 198299124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08348 1 196 AP2-EREBP Transcription Factor Family AT5G25190 59.606 5.75e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g08348 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08348 - - gmx:100527365 270.011