Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08344 ATGGACCTTCCAAGGTCAGAGCCATGTCCATCTGATAACTTGAACACCTCATTTTCAGAGTGTTCAAAGGGTATACCTTCTTCAATGGACACTCAAACAGAGAAGAGACAGACACAAAAGGAAGATAAACAACCCCAACATGAGTCACCTCCACATCTTCTACTAGATCTAAGTCTCCCTAGTAAAGATTCATCAGGTGGTGATGACTCAAAGCCAGAACTCAATCTAATCAACTGTTTTGACACAGATTTGTCCATGAACTCCTCAGAATCTGTTCATGGTAATGAATTATTAGAGCCCCGGATTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCACAAGCACTTGGAGGACACCAAAATGCACATAAACGTGAAAGGACTTTGGCTAAAAGAGGACACAGAGCTGGTTCTTCAGTGGATTATGGACAAAGGTACTCAAGTTTAGCTTCTCTGCCTTTGCATGGCTCTTGTAACAGAACACTTGGAATTCAGGTGCATTCTATGATTCACAAACCCTCTTATCAAACACCCTTTTTGGGTGTGTTTCGTTCCCGTCCTCAAAATGGGTGGCAGAAGCAACCTACTATGTATTCACAACCTGCAATTGGGAATTTTCATGTTGGAGCAGAAACTGAATCATCTTTGGCTGCTCCTAGCATTCCAAGGTTAGGGAAGTTTTCTCCAAGGTTTGTGCAAGAGGGTTTTGGAGGTTATTGGTTGGGTGGTAGTGGTACTATTAACCATTTGAAGAGTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 807 0.4188 MDLPRSEPCPSDNLNTSFSECSKGIPSSMDTQTEKRQTQKEDKQPQHESPPHLLLDLSLPSKDSSGGDDSKPELNLINCFDTDLSMNSSESVHGNELLEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAGSSVDYGQRYSSLASLPLHGSCNRTLGIQVHSMIHKPSYQTPFLGVFRSRPQNGWQKQPTMYSQPAIGNFHVGAETESSLAAPSIPRLGKFSPRFVQEGFGGYWLGGSGTINHLKSKQEELQKLDLSLKL. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08344 268 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 268 IPR044246 GO:0009788
Seca4g08344 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Seca4g08344 268 Gene3D Classic Zinc Finger 81 153 - -
Seca4g08344 268 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
Seca4g08344 268 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Seca4g08344 268 MobiDBLite consensus disorder prediction 34 49 - -
Seca4g08344 268 FunFam Zinc finger protein 2 81 149 - -
Seca4g08344 268 MobiDBLite consensus disorder prediction 9 33 - -
Seca4g08344 268 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08344 Seca-Chr4 198259608 198260414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08344 38 268 C2H2 Transcription Factor Family AT5G10970 42.915 4.46e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g08344 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08344 - - gmx:102666245 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08344 4 198259608 198260414 Seca4g08344 4 198259608 198260414 ECH