Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08340 ATGGACAATAATGAGGAAATTCCATCAGCACCAGCAACACCAGGTACTCCTGGTGCACCTCTTTTTGGTGGGTTTAACTCTGAGAGAACTGGGAATGGTATTAGGAATGGTAGGAAAAAGTCCCTCCTCAAGAATTGTAAGTGCTTCAGTGTTGAAGAGTGGACCATAGAAGATGGAGCCTTACCCACTGTCTCTTGCTCATTGCCACCCCCTCCTATCCCTCTTGCAAGAAAGGTGGGAGCTGAGTTTATAGGGACATTTATTCTGATGTTTGCTGGGACAGCAACTGCTATTGTGAACCAAAAGACACAAGGCTCTGAGACTCTGATTGGATGTGCTGCCTCTACTGGTCTTGCTGTCATGATTGTCATCCTCTCCACTGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCAATTCCCATGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCTGCTATATGTTCTGCATTTGCTCTGAAGGGGGTTTTTCACCCTTTCATGAGTGGTGGAGTCACTGTTCCTTCAGGAGGATATGGCCAAGCTTTTGCTTTGGAATTCATTATCAGCTTTAATCTCATGTTCGTTGTCACTGCGGTGGCCACCGACACAAGAGCTGTGATGATGATTATTGATATTATGTTTATGCAGGTGGGAGAACTTGCGGGAATTGCAGTGGGAGCAACTGTCATGCTCAATATACTCATAGCAGGGCCAGCGTCAGGAGGCTCAATGAACCCAGTAAGAACACTAGGTCCAGCTATTGCCGCAAACAACTACAAAGGCATATGGATCTATCTGATAGCTCCCATACTTGGAGCTCTAGGTGGGGCAGGTACCTATACCGCAGTCAAGCTCTCTGAAGAAGATGATGACAAGGCAAAGGCTTCAAACACCCTGAGCTTCAGAAGGTGA 951 0.4679 MDNNEEIPSAPATPGTPGAPLFGGFNSERTGNGIRNGRKKSLLKNCKCFSVEEWTIEDGALPTVSCSLPPPPIPLARKVGAEFIGTFILMFAGTATAIVNQKTQGSETLIGCAASTGLAVMIVILSTGHISGAHLNPAVTISFAALKQFPWKHVPMYIGAQVLAAICSAFALKGVFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVMMIIDIMFMQVGELAGIAVGATVMLNILIAGPASGGSMNPVRTLGPAIAANNYKGIWIYLIAPILGALGGAGTYTAVKLSEEDDDKAKASNTLSFRR. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08340 316 PANTHER AQUAPORIN NIP2-1 41 301 IPR034294 -
Seca4g08340 316 ProSitePatterns MIP family signature. 134 142 IPR022357 -
Seca4g08340 316 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g08340 316 Gene3D Glycerol uptake facilitator protein. 72 309 IPR023271 -
Seca4g08340 316 FunFam Aquaporin NIP2-1 65 308 - -
Seca4g08340 316 CDD MIP 77 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 Pfam Major intrinsic protein 76 292 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 239 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 77 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 276 296 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 116 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 PRINTS Major intrinsic protein family signature 153 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca4g08340 316 SUPERFAMILY Aquaporin-like 74 299 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08340 Seca-Chr4 198198484 198203715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08340 3 316 Major Intrinsic Protein MIP AT1G80760 73.832 1.10e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08340 K09874 - gmx:100815637 477.248